ViewGene
Locus Name:
GeneID:
Location:

GeneID:5453
TrivialName: PA14_56280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56280
PAO1 Ortholog Locus:
Sequence Length:1128
Protein Length:375
Start: 5024926
Stop: 5023799
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07720.1|AE004849_7 (AE004849) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 373/375 (99%), Positives = 375/375 (100%)
Sequence:
ATGCGCACAGACAAGCCTCCTCTGAAACAGCGTGCGCTGCAAAAGCTCTTGCTCCGCCGGTTCGGCATGGCC
GCAGGCACTTACCTGCTCGGCCTGGTCCTGCTCTGGCTGGCGCTACTCAGCGGCTTCTACCGCGCAGCGCCG
ACCACCGCGGCGGCCAGCACCACCCTGGTGGTGGCTTGCCAACTGGCCTTCCTCTGGCTGTTCGCCAGCGGT
CGCAACCTGCGTTACGCCGATCCCAGCCTGACCGAGCCGCAGGTGCTGGTGGCGATCGCCTGGCTGACCTAT
TTCCTCTATCACGTCGACAGCCTGCGCGGCACCTTCATGGTGTTCTACGTGCTGGCCCTGCTGTTCGGCGTG
TTCCAACTGCCGCCGCGGGTCTTCGCCCGCTGTGCGGCGCTGGCGTTCATCGCTTTTTCCGGCATCTACCTG
GTAGAGGCCTTGCAGCAGCGTCTCGAGCTGCCGGGCCGGGCTGCATTGCAGGTGCTCGTGATGTTCATCGTA
ATGGTCTGGCTGAGCCTGTTCGCCAGCTACATACAGGCGATGCGGCAACGCATGCGCCAGCGCCGCTATGCC
TTGCAGGCGCACCAGGACACGCTGCGCGGCATGATGCGCCAACTGGAAGACCTGGTGGCTACCGACGAACTC
ACCGGGCTGTTCAACCGCCGGCATTTCATGCGCCTGGCCAGTCGGGCGCTGGAAGACCTGCTGCCGAACCGG
CAGCACGGCCTGGCGCTGATCGACCTCGATCACTTCAAGCGGATCAACGACCGCCACGGCCACGCCGCCGGC
GATCGGGTCCTGCAGACCTTCGCCGCGGTGGCGCGTTCCTGTCTGCGCGATGGCGACGTCCTGGCCCGTTAC
GGCGGCGAGGAGTTCGTCCTGCTGCTGCCCCACGCCGACGCGGAACAGCTGGAAAGCTGTTGCGAACGCCTG
CGCCTGGCGTTCGAACAGGCGGAACCGGTCGGGGTCACGGTGGATACCCTGAGCCTTTCGGTGGGCATGACC
CTGCTGTATGCCGACGACGATCTCGACGAGGCCTTGCAGCGGGCCGACCAGGCGCTCTACCGTGCCAAGCGT
GGCGGACGAAACCGCTGCGACGCCACCTGGGAGGTCACCAGTGCCTGA
Translation:
MRTDKPPLKQRALQKLLLRRFGMAAGTYLLGLVLLWLALLSGFYRAAPTTAAASTTLVVACQLAFLWLFASG
RNLRYADPSLTEPQVLVAIAWLTYFLYHVDSLRGTFMVFYVLALLFGVFQLPPRVFARCAALAFIAFSGIYL
VEALQQRLELPGRAALQVLVMFIVMVWLSLFASYIQAMRQRMRQRRYALQAHQDTLRGMMRQLEDLVATDEL
TGLFNRRHFMRLASRALEDLLPNRQHGLALIDLDHFKRINDRHGHAAGDRVLQTFAAVARSCLRDGDVLARY
GGEEFVLLLPHADAEQLESCCERLRLAFEQAEPVGVTVDTLSLSVGMTLLYADDDLDEALQRADQALYRAKR
GGRNRCDATWEVTSA*
AnnotationID:5458GeneID:5453
AnnotatorUID: danlee
Modification Date/Time: 2006-02-08 14:02:34
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:
Confirmed frame-shift mutation results in truncation of first 112 aa of PAO1 PA4332.


















    ReferenceID:10903




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28049




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36694




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5453_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5453
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7846
                           PA4332_tr
                           translation of PA4332
                           487
                           76.59
                           77.00
                           112
                           1901.0
     

     
     
196640
                           gb|AAG07720.1|AE004849_7
                           (AE004849) hypothetical protein PA4332 [Pseudomonas aeruginosa PAO1]
                           487
                           76.59
                           77.00
                           112
                           1901.0
     

     
     
196674
                           emb|CAE41731.1|
                           (BX640415) probable membrane protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           438
                           29.90
                           41.55
                           116
                           312.0
     

     
     
196673
                           emb|CAE33119.1|
                           (BX640445) probable membrane protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           438
                           29.68
                           41.32
                           116
                           305.0
     

     
     
196683
                           gb|AAM35150.1|
                           (AE011650) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           417
                           29.49
                           39.32
                           107
                           275.0
     

     






      

          
GC ORFID: 48455How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1107Glimmer Score: 

          
Start: 4288602Stop: 4287475

          
Length: 1128


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1107 translation of PA1107Homolog Bit Score 120.0

          
Other Homologs:  t_PA0290 (ORF: BLASTX 110.0), t_PA2771 (ORF: BLASTX 108.0), t_PA4332 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCACAGACAAGCCTCCTCTGAAACAGCGTGCGCTGCAAAAGCTCTTGCTCCGCCGGTTCGGCATGGCC 
GCAGGCACTTACCTGCTCGGCCTGGTCCTGCTCTGGCTGGCGCTACTCAGCGGCTTCTACCGCGCAGCGCCG 
ACCACCGCGGCGGCCAGCACCACCCTGGTGGTGGCTTGCCAACTGGCCTTCCTCTGGCTGTTCGCCAGCGGT 
CGCAACCTGCGTTACGCCGATCCCAGCCTGACCGAGCCGCAGGTGCTGGTGGCGATCGCCTGGCTGACCTAT 
TTCCTCTATCACGTCGACAGCCTGCGCGGCACCTTCATGGTGTTCTACGTGCTGGCCCTGCTGTTCGGCGTG 
TTCCAACTGCCGCCGCGGGTCTTCGCCCGCTGTGCGGCGCTGGCGTTCATCGCTTTTTCCGGCATCTACCTG 
GTAGAGGCCTTGCAGCAGCGTCTCGAGCTGCCGGGCCGGGCTGCATTGCAGGTGCTCGTGATGTTCATCGTA 
ATGGTCTGGCTGAGCCTGTTCGCCAGCTACATACAGGCGATGCGGCAACGCATGCGCCAGCGCCGCTATGCC 
TTGCAGGCGCACCAGGACACGCTGCGCGGCATGATGCGCCAACTGGAAGACCTGGTGGCTACCGACGAACTC 
ACCGGGCTGTTCAACCGCCGGCATTTCATGCGCCTGGCCAGTCGGGCGCTGGAAGACCTGCTGCCGAACCGG 
CAGCACGGCCTGGCGCTGATCGACCTCGATCACTTCAAGCGGATCAACGACCGCCACGGCCACGCCGCCGGC 
GATCGGGTCCTGCAGACCTTCGCCGCGGTGGCGCGTTCCTGTCTGCGCGATGGCGACGTCCTGGCCCGTTAC 
GGCGGCGAGGAGTTCGTCCTGCTGCTGCCCCACGCCGACGCGGAACAGCTGGAAAGCTGTTGCGAACGCCTG 
CGCCTGGCGTTCGAACAGGCGGAACCGGTCGGGGTCACGGTGGATACCCTGAGCCTTTCGGTGGGCATGACC 
CTGCTGTATGCCGACGACGATCTCGACGAGGCCTTGCAGCGGGCCGACCAGGCGCTCTACCGTGCCAAGCGT 
GGCGGACGAAACCGCTGCGACGCCACCTGGGAGGTCACCAGTGCCTGA