ViewGene
Locus Name:
GeneID:
Location:

GeneID:5449
TrivialName: PA14_44090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44090
PAO1 Ortholog Locus:
Sequence Length:255
Protein Length:84
Start: 3925511
Stop: 3925257
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN69776.1|AE016614_2 (AE016789) conserved hypothetical protein [Pseudomonas putida KT2440]
Identities = 55/84 (65%), Positives = 66/84 (78%)
Sequence:
ATGCAATGTAGAGCCGGCTGCGGCGCCTGCTGCATAGCACCGTCGATTTCCTCTCCGCTGCCGGGCATGCCG
GCCGGCAAGCCCGCGGGCGTACGCTGCCTGCACCTGGACGAAAACCATCTCTGCGGGCTGTTCGGCCGACCG
GAGCGACCGGCTGTGTGCGGCCAGTTCGGCGCCGATCCGGAAATCTGCGGCGACAGCCGTGAGCAGGCGCTG
GCCCTGATCGCGGAGTGGGAAGTCATCACTGCCGCGTGA
Translation:
MQCRAGCGACCIAPSISSPLPGMPAGKPAGVRCLHLDENHLCGLFGRPERPAVCGQFGADPEICGDSREQAL
ALIAEWEVITAA*
AnnotationID:5454GeneID:5449
AnnotatorUID: danlee
Modification Date/Time: 2006-06-02 00:12:15
Gene Name:
Confidence Code:3
GeneProduct:putative Fe-S-cluster oxidoreductase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|13878864|sp|P58040|YF7A_PSEAE  Hypothetical UPF0153 protein PA1578.1
Length=84

 Score =  183 bits (465),  Expect = 2e-45
 Identities = 84/84 (100%), Positives = 84/84 (100%), Gaps = 0/84 (0%)

gi|84328152|ref|ZP_00976161.1|  COG0727: Predicted Fe-S-cluster oxidoreductase [Pseudomonas aeruginosa 
2192]
 gi|84321543|ref|ZP_00969898.1|  COG0727: Predicted Fe-S-cluster oxidoreductase [Pseudomonas aeruginosa 
C3719]
Length=62

 Score =  135 bits (339),  Expect = 6e-31
 Identities = 62/62 (100%), Positives = 62/62 (100%), Gaps = 0/62 (0%)

>gb|AAF94216.1| (AE004187) proteinase inhibitor, putative [Vibrio cholerae]
          Length = 83

 Score =  122 bits (307), Expect = 3e-28
 Identities = 55/82 (67%), Positives = 65/82 (79%)

>dbj|BAC60434.1| (AP005080) putative proteinase inhibitor [Vibrio
          parahaemolyticus]
          Length = 82

 Score =  116 bits (291), Expect = 2e-26
 Identities = 51/82 (62%), Positives = 63/82 (76%)

>gb|AAM35239.1| (AE011660) proteinase inhibitor [Xanthomonas axonopodis pv. citri
          str. 306]
          Length = 86

 Score =  103 bits (257), Expect = 2e-22
 Identities = 49/80 (61%), Positives = 54/80 (67%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10896




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28041




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37307




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5449_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5449
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
196625
                           gb|AAN69776.1|AE016614_2
                           (AE016789) conserved hypothetical protein [Pseudomonas putida KT2440]
                           84
                           65.47
                           78.57
                           0
                           317.0
     

     
     
196626
                           gb|AAF94216.1|
                           (AE004187) proteinase inhibitor, putative [Vibrio cholerae O1 biovar eltor str. N16961]
                           85
                           64.70
                           76.47
                           3
                           307.0
     

     
     
196629
                           dbj|BAC95167.1|
                           (AP005339) putative proteinase inhibitor [Vibrio vulnificus YJ016]
                           84
                           61.90
                           75.00
                           2
                           290.0
     

     
     
196628
                           gb|AAO55708.1|
                           (AE016863) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           85
                           61.17
                           70.58
                           1
                           290.0
     

     
     
196627
                           dbj|BAC60434.1|
                           (AP005080) putative proteinase inhibitor [Vibrio parahaemolyticus]
                           84
                           60.71
                           75.00
                           2
                           291.0
     

     






      

          
GC ORFID: 48451How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold1_revised_gene987Glimmer Score: 

          
Start: 1028398Stop: 1028652

          
Length: 255


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold1_revised_gene987 related to: gi|13878864|sp|P58040|YF7A_PSEAE Hypothetical protein PA1578.1Homolog Bit Score 121.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCAATGTAGAGCCGGCTGCGGCGCCTGCTGCATAGCACCGTCGATTTCCTCTCCGCTGCCGGGCATGCCG 
GCCGGCAAGCCCGCGGGCGTACGCTGCCTGCACCTGGACGAAAACCATCTCTGCGGGCTGTTCGGCCGACCG 
GAGCGACCGGCTGTGTGCGGCCAGTTCGGCGCCGATCCGGAAATCTGCGGCGACAGCCGTGAGCAGGCGCTG 
GCCCTGATCGCGGAGTGGGAAGTCATCACTGCCGCGTGA