ViewGene
Locus Name:
GeneID:
Location:

GeneID:5448
TrivialName: PA14_08930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08930
PAO1 Ortholog Locus:PA4255
Sequence Length:192
Protein Length:63
Start: 763700
Stop: 763891
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07643.1|AE004841_21 (AE004841) 50S ribosomal protein L29 [Pseudomonas aeruginosa PAO1]
Identities = 63/63 (100%), Positives = 63/63 (100%)
Sequence:
ATGAAAGCGAATGAACTTCGTGAAAAATCCGTTGAGCAGCTGAACGAGCAACTGCTCGGCCTGCTGCGCGAC
CAGTTCAATCTGCGCATGCAGAAAGCAACTGGCCAGTTGGGGCAGTCTCACCTGCTCTCGCAGGTTAAGCGC
GACATCGCTCGCGTTAAAACTGTGCTCAATCAGCAAGCAGGTAAGTGA
Translation:
MKANELREKSVEQLNEQLLGLLRDQFNLRMQKATGQLGQSHLLSQVKRDIARVKTVLNQQAGK*
AnnotationID:5453GeneID:5448
AnnotatorUID: diggins
Modification Date/Time: 2005-04-03 11:11:35
Gene Name:rpmC
Confidence Code:2
GeneProduct:50S ribosomal protein L29
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00831
Secondary Functional Category(ies):translation, ribosomal structure and biogenesis
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54176.1| (AE016858) ribosomal protein L29 [Pseudomonas syringae pv. tomato
          str. DC3000]
          Length = 63

 Score =  119 bits (299), Expect = 3e-27
 Identities = 61/63 (96%), Positives = 62/63 (98%)

>gb|AAN66092.1|AE016238_10 (AE016775) ribosomal protein L29 [Pseudomonas putida KT2440]
          Length = 64

 Score =  119 bits (299), Expect = 3e-27
 Identities = 61/63 (96%), Positives = 62/63 (98%)

>gb|AAN82515.1|AE016767_275 (AE016767) 50S ribosomal protein L29 [Escherichia coli CFT073]
          Length = 63

 Score = 95.9 bits (237), Expect = 5e-20
 Identities = 47/62 (75%), Positives = 56/62 (90%)








 
Structural Features:
pfam00831, Ribosomal_L29, Ribosomal L29 protein.
CD-Length = 58 residues, 100.0% aligned
Score = 57.8 bits (140), Expect = 3e-10
Identities = 32/58 (55%), Positives = 42/58 (72%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10894




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28039




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36538




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5448_cdd.html


    		




 
URL:

















    ReferenceID:36732




  
Author/Investigator(s):
        Zurawski G, Zurawski SM.





  
Title:
        Structure of the Escherichia coli S10 ribosomal protein operon.




  
PubMed:
        3892488


MedLine:
        




    
Source:
Nucleic Acids Res. 1985 Jun 25;13(12):4521-6.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=3892488

















    ReferenceID:36744




  
Author/Investigator(s):
        Bitar KG.





  
Title:
        The primary structure of the ribosomal protein L29 from Escherichia coli.




  
PubMed:
        1092361


MedLine:
        




    
Source:
Biochim Biophys Acta. 1975 Mar 28;386(1):99-106.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=75146787&dopt=Abstract









           
Homologs By Global Alignment 

           

       



     
Gene ID:5448
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7843
                           PA4255_tr
                           translation of PA4255
                           63
                           99.99
                           99.99
                           0
                           306.0
     

     
     
196622
                           gb|AAG07643.1|AE004841_21
                           (AE004841) 50S ribosomal protein L29 [Pseudomonas aeruginosa PAO1]
                           63
                           99.99
                           99.99
                           0
                           306.0
     

     
     
196623
                           gb|AAO54176.1|
                           (AE016858) ribosomal protein L29 [Pseudomonas syringae pv. tomato str. DC3000]
                           63
                           96.82
                           98.41
                           0
                           299.0
     

     
     
196624
                           gb|AAN66092.1|AE016238_10
                           (AE016775) ribosomal protein L29 [Pseudomonas putida KT2440]
                           64
                           95.31
                           96.87
                           1
                           299.0
     

     






      

          
GC ORFID: 48450How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4255Glimmer Score: 

          
Start: 4190239Stop: 4190048

          
Length: 192


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4255 translation of PA4255Homolog Bit Score 122.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5193 (ORF: BLASTX 119.0), t_PA4255 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAGCGAATGAACTTCGTGAAAAATCCGTTGAGCAGCTGAACGAGCAACTGCTCGGCCTGCTGCGCGAC 
CAGTTCAATCTGCGCATGCAGAAAGCAACTGGCCAGTTGGGGCAGTCTCACCTGCTCTCGCAGGTTAAGCGC 
GACATCGCTCGCGTTAAAACTGTGCTCAATCAGCAAGCAGGTAAGTGA