ViewGene

Locus Name:
GeneID:
Location:

GeneID:5447
TrivialName: PA14_25520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25520
PAO1 Ortholog Locus:PA2980
Sequence Length:186
Protein Length:61
Start: 2230687
Stop: 2230872
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06368.1|AE004723_12 (AE004723) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 61/61 (100%), Positives = 61/61 (100%)
Sequence:
ATGGACCCGAAACTCCTCGATATTCTTGCCTGCCCGTTGACCAAGGGCCCGCTGGTGCTCAGCGAAGACAAG
ACCGAACTGATCAGCAAGCAGGCTGGCCTGGCCTATCCGATCCGCGACGGCATCCCGGTGATGCTGGAGAGC
GAGGCTCGCTCCCTGAACGTGGACGAGCGGCTGGACAAGTAA
Translation:
MDPKLLDILACPLTKGPLVLSEDKTELISKQAGLAYPIRDGIPVMLESEARSLNVDERLDK*
AnnotationID:5452GeneID:5447
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 08:08:22
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2980
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN79526.1|AE016758_130 (AE016758) Protein ycaR [Escherichia coli CFT073]
          Length = 60

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 32/57 (56%), Positives = 43/57 (75%)

Structural Features:
Genomic Context:
Comment:
ReferenceID:10892
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28037
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36039
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5447_cdd.html
URL:
Homologs By Global Alignment
Gene ID:5447

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7842 PA2980_tr translation of PA2980 61 99.99 99.99 0 305.0
196619 gb|AAG06368.1|AE004723_12 (AE004723) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 61 99.99 99.99 0 305.0
196620 gb|AAN67520.1|AE016380_8 (AE016781) conserved hypothetical protein [Pseudomonas putida KT2440] 61 86.88 90.16 0 260.0
196621 gb|AAO57311.1| (AE016869) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 61 83.60 88.52 0 256.0
GC ORFID: 48449How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2980Glimmer Score:
Start: 2723238Stop: 2723053
Length: 186
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA2980 translation of PA2980Homolog Bit Score 122.0
Other Homologs: psyr_15may02_Scaffold13_revised_gene2178 (ORF: BLASTX 102.0), t_PA2980 (ORF: GLIMMER)
GC ORF Sequence
ATGGACCCGAAACTCCTCGATATTCTTGCCTGCCCGTTGACCAAGGGCCCGCTGGTGCTCAGCGAAGACAAG
ACCGAACTGATCAGCAAGCAGGCTGGCCTGGCCTATCCGATCCGCGACGGCATCCCGGTGATGCTGGAGAGC
GAGGCTCGCTCCCTGAACGTGGACGAGCGGCTGGACAAGTAA