ViewGene
Locus Name:
GeneID:
Location:

GeneID:5445
TrivialName: PA14_42180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42180
PAO1 Ortholog Locus:
Sequence Length:687
Protein Length:228
Start: 3763238
Stop: 3762552
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05118.1|AE004599_3 (AE004599) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 199/210 (94%), Positives = 200/210 (95%), Gaps = 4/210 (1%)
Sequence:
CTGATCCTGACCCATGCCGAGTTCTGTCCGCCAGGCCATCTGGGTGCCGTGCTGGCGGCGCGCGGCCTGGAC
TTCCGCGTGATCCGCGCCGACCTCGGCGAACTCGCCGGTCTCGACGCCGAACGCCCGCGAGCGGTGGCGATC
ATGGGTGGGCCGATGAGCGTCAACGACGACCTGCCCTGGTTGCGCGACGAACTGGCGCTGCTGCGTCGCTTC
ATCGAGCGGCGCATCCCGCTGATCGGCCATTGCCTCGGCGGCCAGTTGCTGGCCCGCGCCCTGGGCGCGACG
GTGCGGCACCAGCCCTACACCGAAATGGGCTGGCAGCCCATGCAGCGGGAAAGCCGCGACAGTCCATGGCTG
GCCGGGCTGCCGGAGCGCTTCTCGATCTTCCAGTGGCACGGCGATGCCTTCGACCTGCCGCAGGGCGCCGAG
CGCCTGCTGTCCAGCCCGTGGTGCGAGAACCAGGGGTTTTCCTGGGGCGATCACGTACTCGGCCTGCAAGGC
CATCCGGAAATGACCGAGGAACTGGTGCGGCGCTGGATCGCCGGCTGGCCGCACCTGCTCGATCCCTCCCAG
CCCAGCCAGCAATCCGCCGAGGACATGCTGGCCGGGTTGCCTGCCAAGGTTGCCGGGCTGAATCGGGTGGCC
GAGGGTTTCTACCGTCATTGGCTGTCGCTGATCGATTGA
Translation:
MILTHAEFCPPGHLGAVLAARGLDFRVIRADLGELAGLDAERPRAVAIMGGPMSVNDDLPWLRDELALLRRF
IERRIPLIGHCLGGQLLARALGATVRHQPYTEMGWQPMQRESRDSPWLAGLPERFSIFQWHGDAFDLPQGAE
RLLSSPWCENQGFSWGDHVLGLQGHPEMTEELVRRWIAGWPHLLDPSQPSQQSAEDMLAGLPAKVAGLNRVA
EGFYRHWLSLID*
AnnotationID:5450GeneID:5445
AnnotatorUID: danlee
Modification Date/Time: 2006-02-07 18:06:05
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1729
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0518
Secondary Functional Category(ies):amino acid biosynthesis and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
COG0518, GuaA, GMP synthase - Glutamine amidotransferase domain 
[Nucleotide transport and metabolism]
CD-Length = 198 residues,  94.4% aligned
Score =  182 bits (463), Expect = 3e-47
Identities = 69/187 (36%), Positives = 94/187 (50%), Gaps = 2/187 (1%)






 
Structural Features:
gi|84328049|ref|ZP_00976060.1|  COG0518: GMP synthase - Glutamine amidotransferase domain [Pseudomonas 
aeruginosa 2192]
Length=232

 Score =  470 bits (1210),  Expect = 1e-131
 Identities = 222/227 (97%), Positives = 225/227 (99%), Gaps = 0/227 (0%)

gi|9947705|gb|AAG05118.1|  conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|15596926|ref|NP_250420.1|  hypothetical protein PA1729 [Pseudomonas aeruginosa PAO1]
Length=215

 Score =  415 bits (1066),  Expect = 7e-115
 Identities = 199/210 (94%), Positives = 200/210 (95%), Gaps = 4/210 (1%)

gi|84321460|ref|ZP_00969817.1|  COG0518: GMP synthase - Glutamine amidotransferase domain [Pseudomonas 
aeruginosa C3719]
Length=180

 Score =  376 bits (966),  Expect = 3e-103
 Identities = 175/179 (97%), Positives = 177/179 (98%), Gaps = 0/179 (0%)






   
Genomic Context:






   
Comment:
Confirmed frame-shift in C-terminal region results in altered sequence with respect to PA1729.


















    ReferenceID:15348




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28033




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37205




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5445_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5445
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7839
                           PA1729_tr
                           translation of PA1729
                           236
                           84.74
                           84.74
                           29
                           1071.0
     

     
     
196607
                           gb|AAG05118.1|AE004599_3
                           (AE004599) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           236
                           84.74
                           84.74
                           29
                           1071.0
     

     
     
196610
                           gb|AAG03920.1|AE004489_12
                           (AE004489) probable glutamine amidotransferase [Pseudomonas aeruginosa PAO1]
                           267
                           32.20
                           41.57
                           68
                           316.0
     

     
     
7840
                           PA0531_tr
                           translation of PA0531
                           267
                           32.20
                           41.57
                           68
                           316.0
     

     
     
196608
                           gb|AAM06075.1|
                           (AE010967) conserved hypothetical protein [Methanosarcina acetivorans str. C2A] [Methanosarcina acetivorans C2A]
                           264
                           31.06
                           44.69
                           62
                           316.0
     

     






      

          
GC ORFID: 48447How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0531Glimmer Score: 

          
Start: 1190671Stop: 1191357

          
Length: 687


          
Start Codon: CTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0531 translation of PA0531Homolog Bit Score 122.0

          
Other Homologs:  t_PA1729 (ORF: GLIMMER)

          
GC ORF Sequence

           
CTGATCCTGACCCATGCCGAGTTCTGTCCGCCAGGCCATCTGGGTGCCGTGCTGGCGGCGCGCGGCCTGGAC 
TTCCGCGTGATCCGCGCCGACCTCGGCGAACTCGCCGGTCTCGACGCCGAACGCCCGCGAGCGGTGGCGATC 
ATGGGTGGGCCGATGAGCGTCAACGACGACCTGCCCTGGTTGCGCGACGAACTGGCGCTGCTGCGTCGCTTC 
ATCGAGCGGCGCATCCCGCTGATCGGCCATTGCCTCGGCGGCCAGTTGCTGGCCCGCGCCCTGGGCGCGACG 
GTGCGGCACCAGCCCTACACCGAAATGGGCTGGCAGCCCATGCAGCGGGAAAGCCGCGACAGTCCATGGCTG 
GCCGGGCTGCCGGAGCGCTTCTCGATCTTCCAGTGGCACGGCGATGCCTTCGACCTGCCGCAGGGCGCCGAG 
CGCCTGCTGTCCAGCCCGTGGTGCGAGAACCAGGGGTTTTCCTGGGGCGATCACGTACTCGGCCTGCAAGGC 
CATCCGGAAATGACCGAGGAACTGGTGCGGCGCTGGATCGCCGGCTGGCCGCACCTGCTCGATCCCTCCCAG 
CCCAGCCAGCAATCCGCCGAGGACATGCTGGCCGGGTTGCCTGCCAAGGTTGCCGGGCTGAATCGGGTGGCC 
GAGGGTTTCTACCGTCATTGGCTGTCGCTGATCGATTGA