ViewGene
Locus Name:
GeneID:
Location:

GeneID:5444
TrivialName: PA14_52570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52570
PAO1 Ortholog Locus:PA0905
Sequence Length:186
Protein Length:61
Start: 4660578
Stop: 4660393
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04294.1|AE004525_2 (AE004525) RsmA, regulator of secondary metabolites [Pseudomonas aeruginosa PAO1]
Identities = 61/61 (100%), Positives = 61/61 (100%)
Sequence:
ATGCTGATTCTGACTCGTCGGGTCGGAGAGACCCTGATGGTAGGTGACGACGTCACCGTGACGGTACTGGGT
GTCAAAGGGAACCAGGTGCGCATCGGCGTCAACGCGCCGAAGGAAGTCGCCGTGCACCGGGAGGAAATTTAC
CagCGCATCCAGAAAGAGAAAGATCAAGAGCCAAACCATTAA
Translation:
MLILTRRVGETLMVGDDVTVTVLGVKGNQVRIGVNAPKEVAVHREEIYQRIQKEKDQEPNH*
AnnotationID:5449GeneID:5444
AnnotatorUID: danlee
Modification Date/Time: 2006-02-13 16:04:54
Gene Name:rsmA 
Confidence Code:1
GeneProduct:RsmA, regulator of secondary metabolites
Cell Localization:()
Synonyms:PA0905, csrA 
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:carbon storage regulator 
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):Post-transcriptional regulators
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1551, CsrA, Carbon storage regulator. Score: 88.0, 4e-19
pfam02599, CsrA, Global regulator protein family. Score: 81.1, 5e-17






   
Genomic Context:






   
Comment:


















    ReferenceID:10886




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28031




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32010




  
Author/Investigator(s):
        Pessi G, Williams F, Hindle Z, Heurlier K, Holden MT, Camara M, Haas D, Williams P.






  
Title:
        The global posttranscriptional regulator RsmA modulates production of virulence determinants and N-acylhomoserine lactones in Pseudomonas aeruginosa.





  
PubMed:
        11673439


MedLine:
        




    
Source:
J Bacteriol. 2001 Nov;183(22):6676-83.
Erratum in J Bacteriol 2002 Jan;184(1):335.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5444
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7838
                           PA0905_tr
                           translation of PA0905
                           61
                           99.99
                           99.99
                           0
                           308.0
     

     
     
196572
                           gb|AAR21564.1|
                           (AY449718) RsmA [Pseudomonas fluorescens]
                           61
                           99.99
                           99.99
                           0
                           308.0
     

     
     
196573
                           gb|AAG04294.1|AE004525_2
                           (AE004525) RsmA, regulator of secondary metabolites [Pseudomonas aeruginosa PAO1]
                           61
                           99.99
                           99.99
                           0
                           308.0
     

     
     
196574
                           gb|AAC16242.1|
                           (AF061757) carbon storage regulator [Pseudomonas aeruginosa]
                           61
                           99.99
                           99.99
                           0
                           308.0
     

     
     
196589
                           gb|AAK94932.1|AF403736_1
                           (AF403736) RsmaPm [Proteus mirabilis]
                           62
                           85.48
                           91.93
                           1
                           265.0
     

     






      

          
GC ORFID: 48446How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0905Glimmer Score: 

          
Start: 293329Stop: 293514

          
Length: 186


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0905 translation of PA0905Homolog Bit Score 123.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7826 (ORF: BLASTX 101.0), t_PA0905 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGATTCTGACTCGTCGGGTCGGAGAGACCCTGATGGTAGGTGACGACGTCACCGTGACGGTACTGGGT 
GTCAAAGGGAACCAGGTGCGCATCGGCGTCAACGCGCCGAAGGAAGTCGCCGTGCACCGGGAGGAAATTTAC 
CagCGCATCCAGAAAGAGAAAGATCAAGAGCCAAACCATTAA