ViewGene

Locus Name:
GeneID:
Location:

GeneID:5443
TrivialName: PA14_27830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27830
PAO1 Ortholog Locus:PA2808
Sequence Length:192
Protein Length:63
Start: 2411679
Stop: 2411870
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06196.1|AE004708_2 (AE004708) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 63/63 (100%), Positives = 63/63 (100%)
Sequence:
ATGCGTACCTTCACTGCCTCCACCCTCGCTTTCCTGCTGGTCCTCGCCCCGACCGTTCCGGCCATGGCCGAC
AGCGGCGGCGACATCGTCTTCGAGCGCATGCAGGCCCAGGCCGCCAAGGCTCGTGCCGCGCACCAGGAAAAA
CTGGCGAAGCAGGCCGAAGCGACGAAGAAGGACAAGGAAAACTGCTGA
Translation:
MRTFTASTLAFLLVLAPTVPAMADSGGDIVFERMQAQAAKARAAHQEKLAKQAEATKKDKENC*
AnnotationID:5448GeneID:5443
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 09:09:23
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2808
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:10884
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28029
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5443

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7837 PA2808_tr translation of PA2808 63 99.99 99.99 0 310.0
196571 gb|AAG06196.1|AE004708_2 (AE004708) hypothetical protein PA2808 [Pseudomonas aeruginosa PAO1] 63 99.99 99.99 0 310.0
GC ORFID: 48445How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2808Glimmer Score:
Start: 2542247Stop: 2542056
Length: 192
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2808 translation of PA2808Homolog Bit Score 124.0
Other Homologs: t_PA2808 (ORF: GLIMMER)
GC ORF Sequence
ATGCGTACCTTCACTGCCTCCACCCTCGCTTTCCTGCTGGTCCTCGCCCCGACCGTTCCGGCCATGGCCGAC
AGCGGCGGCGACATCGTCTTCGAGCGCATGCAGGCCCAGGCCGCCAAGGCTCGTGCCGCGCACCAGGAAAAA
CTGGCGAAGCAGGCCGAAGCGACGAAGAAGGACAAGGAAAACTGCTGA