ViewGene
Locus Name:
GeneID:
Location:

GeneID:5442
TrivialName: PA14_69350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69350
PAO1 Ortholog Locus:
Sequence Length:480
Protein Length:159
Start: 6186780
Stop: 6187259
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN65828.1|AE016211_6 (AE016774) conserved hypothetical protein [Pseudomonas putida KT2440]
Identities = 73/158 (46%), Positives = 96/158 (60%), Gaps = 2/158 (1%)
Sequence:
ATGACTGGAAATGTCTGGAAATTCGCGGTGGACGTCTATGCCCGGCCGGGCGTGGAAACGGCTTGCCTCGCG
CTTCAGGAGCAAGGTGCGGACGTCTGCCTGTTGCTGGTCGCCGCCTGGCTTGGCAGGCGCGGTGTGAGCTGC
TCGAAAGAACGCGCCCAGATCCTGGAGAACGCCGCGCGCCCCTGGCGCGAAACGGTCATCGAACCCCTGCGC
AGATTGCGTTGCGCCTGGCGCGAAGCGGCAACCCACGACGCCTGCCTGGCCGAACTCCGCGAGGAAATGAAG
GCCCAGGAACTACGAGCGGAACGGGAACACCTGCAACGCCTGGCCGACCTGGCCACAGCCTGGCTGGAGGGC
CAGGAAGCGAATCGCAGTGCGGATGCCTGGCTGCAAGCCTGCAGCCGGGACATCTGCACGGAAGCAGAGCGC
CGGGCTTTGCTGGTGCTTGGCTCGGCGGCTTTGCAGACAGCGCCTTAG
Translation:
MTGNVWKFAVDVYARPGVETACLALQEQGADVCLLLVAAWLGRRGVSCSKERAQILENAARPWRETVIEPLR
RLRCAWREAATHDACLAELREEMKAQELRAEREHLQRLADLATAWLEGQEANRSADAWLQACSRDICTEAER
RALLVLGSAALQTAP*
AnnotationID:5447GeneID:5442
AnnotatorUID: danlee
Modification Date/Time: 2006-06-01 23:11:58
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|77647|pir||JQ0136  hypothetical 17.8K protein - Pseudomonas aeruginosa
Length=159

 Score =  322 bits (825),  Expect = 3e-87
 Identities = 159/159 (100%), Positives = 159/159 (100%), Gaps = 0/159 (0%)

gi|84324042|ref|ZP_00972107.1|  hypothetical protein Paer2_01004750 [Pseudomonas aeruginosa 2192]
 gi|84317877|ref|ZP_00966312.1|  hypothetical protein PaerC_01004337 [Pseudomonas aeruginosa C3719]
Length=150

 Score =  301 bits (770),  Expect = 7e-81
 Identities = 149/150 (99%), Positives = 150/150 (100%), Gaps = 0/150 (0%)

gi|94417728|ref|ZP_01297545.1|  hypothetical protein PaerP_01000506 [Pseudomonas aeruginosa PA7]
Length=150

 Score =  238 bits (608),  Expect = 4e-62
 Identities = 121/150 (80%), Positives = 128/150 (85%), Gaps = 0/150 (0%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10882




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28027




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34807




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5442_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5442
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
196569
                           gb|AAN65828.1|AE016211_6
                           (AE016774) conserved hypothetical protein [Pseudomonas putida KT2440]
                           161
                           45.34
                           59.62
                           4
                           336.0
     

     
     
196570
                           gb|AAO53691.1|
                           (AE016856) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           164
                           40.85
                           53.65
                           7
                           315.0
     

     






      

          
GC ORFID: 48444How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold2_revised_gene3001Glimmer Score: 

          
Start: 5450467Stop: 5450946

          
Length: 480


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: psyr_15may02_Scaffold2_revised_gene3001 related to: gi|77647|pir||JQ0136 hypothetical 17.8K protein - Pseudomonas aeruginosaHomolog Bit Score 124.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3001 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTGGAAATGTCTGGAAATTCGCGGTGGACGTCTATGCCCGGCCGGGCGTGGAAACGGCTTGCCTCGCG 
CTTCAGGAGCAAGGTGCGGACGTCTGCCTGTTGCTGGTCGCCGCCTGGCTTGGCAGGCGCGGTGTGAGCTGC 
TCGAAAGAACGCGCCCAGATCCTGGAGAACGCCGCGCGCCCCTGGCGCGAAACGGTCATCGAACCCCTGCGC 
AGATTGCGTTGCGCCTGGCGCGAAGCGGCAACCCACGACGCCTGCCTGGCCGAACTCCGCGAGGAAATGAAG 
GCCCAGGAACTACGAGCGGAACGGGAACACCTGCAACGCCTGGCCGACCTGGCCACAGCCTGGCTGGAGGGC 
CAGGAAGCGAATCGCAGTGCGGATGCCTGGCTGCAAGCCTGCAGCCGGGACATCTGCACGGAAGCAGAGCGC 
CGGGCTTTGCTGGTGCTTGGCTCGGCGGCTTTGCAGACAGCGCCTTAG