ViewGene
Locus Name:
GeneID:
Location:

GeneID:5440
TrivialName: PA14_42320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42320
PAO1 Ortholog Locus:PA1718
Sequence Length:204
Protein Length:67
Start: 3772241
Stop: 3772038
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAC44776.1| (U56077) PscE [Pseudomonas aeruginosa]
Identities = 67/67 (100%), Positives = 67/67 (100%)
Sequence:
ATGATGACAGCCTTGGAAACGCGACTGTCGGTCGCTGACGGCACGCATGCCGCAGCGCTCCGGCAGCGTCTG
CAGGCGGCGCTGGCGGAGTGTCGCCGGGAACTGGCCAGAGGCGCCGGCCCGGAGCGCTTTCAATTCCTGCAA
CAGCAGGCCCGGGCCCTCGAAGGCGGTCTCGGCATTCTTTCGCAGCTCACAGAGGACTAA
Translation:
MMTALETRLSVADGTHAAALRQRLQAALAECRRELARGAGPERFQFLQQQARALEGGLGILSQLTED*
AnnotationID:5445GeneID:5440
AnnotatorUID: danlee
Modification Date/Time: 2006-01-30 11:11:03
Gene Name:pscE
Confidence Code:1
GeneProduct:type III export protein PscE
Cell Localization:(1) Cytoplasmic
Synonyms:yscE
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Type III Secretion
Homology:






 
Structural Features:
CDD Search: No hits found at any threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10878




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28024




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36581




  
Author/Investigator(s):
        Michiels T, Vanooteghem JC, Lambert de Rouvroit C, China B, Gustin A, Boudry P, Cornelis GR.





  
Title:
        Analysis of virC, an operon involved in the secretion of Yop proteins by Yersinia enterocolitica.




  
PubMed:
        1860816


MedLine:
        




    
Source:
J Bacteriol. 1991 Aug;173(16):4994-5009.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1860816

















    ReferenceID:37840




  
Author/Investigator(s):
        Yahr TL, Goranson J, Frank DW.





  
Title:
        Exoenzyme S of Pseudomonas aeruginosa is secreted by a type III pathway.




  
PubMed:
        8971719


MedLine:
        




    
Source:
Mol Microbiol. 1996 Dec;22(5):991-1003.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=97126825&dopt=Abstract









           
Homologs By Global Alignment 

           

       



     
Gene ID:5440
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
196567
                           gb|AAC44776.1|
                           (U56077) PscE [Pseudomonas aeruginosa]
                           67
                           99.99
                           99.99
                           0
                           327.0
     

     
     
7836
                           PA1718_tr
                           translation of PA1718
                           67
                           97.01
                           97.01
                           0
                           313.0
     

     
     
196568
                           gb|AAG05107.1|AE004598_6
                           (AE004598) type III export protein PscE [Pseudomonas aeruginosa PAO1]
                           67
                           97.01
                           97.01
                           0
                           313.0
     

     






      

          
GC ORFID: 48442How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1718Glimmer Score: 

          
Start: 1181668Stop: 1181871

          
Length: 204


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1718 translation of PA1718Homolog Bit Score 125.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGATGACAGCCTTGGAAACGCGACTGTCGGTCGCTGACGGCACGCATGCCGCAGCGCTCCGGCAGCGTCTG 
CAGGCGGCGCTGGCGGAGTGTCGCCGGGAACTGGCCAGAGGCGCCGGCCCGGAGCGCTTTCAATTCCTGCAA 
CAGCAGGCCCGGGCCCTCGAAGGCGGTCTCGGCATTCTTTCGCAGCTCACAGAGGACTAA