ViewGene

Locus Name:
GeneID:
Location:

GeneID:5439
TrivialName: PA14_70630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70630
PAO1 Ortholog Locus:PA5350
Sequence Length:168
Protein Length:55
Start: 6291916
Stop: 6291749
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08735.1|AE004947_5 (AE004947) Rubredoxin 2 [Pseudomonas aeruginosa PAO1]
Identities = 55/55 (100%), Positives = 55/55 (100%)
Sequence:
ATGCGCAAGTGGCAATGCGTGGTCTGCGGCTTCATCTACGACGAAGCCCTGGGCCTGCCCGAAGAAGGCATT
CCGGCGGGAACCCGTTGGGAGGACATCCCGGCGGACTGGGTCTGCCCGGACTGCGGTGTCGGCAAGATCGAT
TTCGAGATGATCGAGATCGCCTGA
Translation:
MRKWQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGVGKIDFEMIEIA*
AnnotationID:5444GeneID:5439
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 06:06:45
Gene Name:rubA2
Confidence Code:1
GeneProduct:Rubredoxin 2
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1773,cd00730,pfam00301
Secondary Functional Category(ies):energy metabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO58893.1| (AE016875) rubredoxin [Pseudomonas syringae pv. tomato str.
          DC3000]
          Length = 55

 Score =  101 bits (251), Expect = 1e-21
 Identities = 40/55 (72%), Positives = 49/55 (89%)

>gb|AAN70880.1|AE016732_5 (AE016794) rubredoxin [Pseudomonas putida KT2440]
          Length = 55

 Score =  100 bits (250), Expect = 2e-21
 Identities = 40/54 (74%), Positives = 46/54 (85%)

>dbj|BAB33291.1| (AB049412) rubredoxin [Acinetobacter sp. M-1]
          Length = 54

 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 39/54 (72%), Positives = 47/54 (87%)

Structural Features:
COG1773, Rubredoxin [Energy production and conversion]
CD-Length = 55 residues, 100.0% aligned
Score = 76.1 bits (187), Expect = 9e-16
Identities = 32/55 (58%), Positives = 41/55 (74%)

cd00730, rubredoxin, Rubredoxin; nonheme iron binding domains containing 
a [Fe(SCys)4] center.
CD-Length = 50 residues, 100.0% aligned
Score = 70.3 bits (172), Expect = 5e-14
Identities = 31/50 (62%), Positives = 39/50 (78%)

pfam00301, Rubredoxin, Rubredoxin.
CD-Length = 49 residues, 100.0% aligned
Score = 68.0 bits (166), Expect = 2e-13
Identities = 30/49 (61%), Positives = 36/49 (73%)
Genomic Context:
Comment:
ReferenceID:10876
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28023
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34739
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5439_cdd.html
URL:
ReferenceID:35688
Author/Investigator(s): Whyte LG, Smits TH, Labbe D, Witholt B, Greer CW, van Beilen JB.
Title: Gene cloning and characterization of multiple alkane hydroxylase systems in Rhodococcus strains Q15 and NRRL B-16531.
PubMed: 12450813
MedLine:
Source:
Appl Environ Microbiol. 2002 Dec;68(12):5933-42.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=12450813
Homologs By Global Alignment
Gene ID:5439

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7834 PA5350_tr translation of PA5350 55 99.99 99.99 0 316.0
196563 gb|AAG08735.1|AE004947_5 (AE004947) Rubredoxin 2 [Pseudomonas aeruginosa PAO1] 55 99.99 99.99 0 316.0
7835 PA5351_tr translation of PA5351 55 81.81 89.09 0 272.0
196564 gb|AAG08736.1|AE004947_6 (AE004947) Rubredoxin 1 [Pseudomonas aeruginosa PAO1] 55 81.81 89.09 0 272.0
196565 gb|AAO58893.1| (AE016875) rubredoxin [Pseudomonas syringae pv. tomato str. DC3000] 55 72.72 89.09 0 251.0
GC ORFID: 48441How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5350Glimmer Score:
Start: 5555605Stop: 5555438
Length: 168
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5350 translation of PA5350Homolog Bit Score 126.0
Other Homologs: t_PA5351 (ORF: BLASTX 109.0), t_PA5350 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCAAGTGGCAATGCGTGGTCTGCGGCTTCATCTACGACGAAGCCCTGGGCCTGCCCGAAGAAGGCATT
CCGGCGGGAACCCGTTGGGAGGACATCCCGGCGGACTGGGTCTGCCCGGACTGCGGTGTCGGCAAGATCGAT
TTCGAGATGATCGAGATCGCCTGA