ViewGene
Locus Name:
GeneID:
Location:

GeneID:5438
TrivialName: PA14_70060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70060
PAO1 Ortholog Locus:PA5306
Sequence Length:192
Protein Length:63
Start: 6247630
Stop: 6247439
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08691.1|AE004943_7 (AE004943) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 63/63 (100%), Positives = 63/63 (100%)
Sequence:
ATGCGCCTCTGCGCTCTATTCGCTGTCCTGCTGCTGGGCAGCCTGACGATGGCCTGCACGCCCACCGTGCAA
CTGGCGGCTCCCAGCGAGCCGATCAACATCAATCTCAACGTGAAAATCGAGCACGAGATCTACATCAAGGTC
GACAAGGCTCTGGACGGCATCATCAACGAGAACAGCGGCCTGTTCTAA
Translation:
MRLCALFAVLLLGSLTMACTPTVQLAAPSEPININLNVKIEHEIYIKVDKALDGIINENSGLF*
AnnotationID:5443GeneID:5438
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 13:01:15
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:PA5306
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL20563.1| (AE008772) putative outer membrane lipoprotein [Salmonella
          typhimurium LT2]
          Length = 63

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 28/63 (44%), Positives = 42/63 (66%)

>gb|AAO69181.1| (AE016839) putative lipoprotein [Salmonella enterica subsp.
          enterica serovar Typhi Ty2]
          Length = 63

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 28/63 (44%), Positives = 42/63 (66%)






 
Structural Features:
CDD Search: No hits at any threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10874




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28021




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5438
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7833
                           PA5306_tr
                           translation of PA5306
                           63
                           99.99
                           99.99
                           0
                           316.0
     

     
     
196562
                           gb|AAG08691.1|AE004943_7
                           (AE004943) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           63
                           99.99
                           99.99
                           0
                           316.0
     

     






      

          
GC ORFID: 48440How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5306Glimmer Score: 

          
Start: 5511319Stop: 5511128

          
Length: 192


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA5306 translation of PA5306Homolog Bit Score 126.0

          
Other Homologs:  t_PA5306 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCTCTGCGCTCTATTCGCTGTCCTGCTGCTGGGCAGCCTGACGATGGCCTGCACGCCCACCGTGCAA 
CTGGCGGCTCCCAGCGAGCCGATCAACATCAATCTCAACGTGAAAATCGAGCACGAGATCTACATCAAGGTC 
GACAAGGCTCTGGACGGCATCATCAACGAGAACAGCGGCCTGTTCTAA