ViewGene
Locus Name:
GeneID:
Location:

GeneID:5437
TrivialName: PA14_28670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28670
PAO1 Ortholog Locus:PA2742
Sequence Length:195
Protein Length:64
Start: 2469754
Stop: 2469948
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06130.1|AE004702_7 (AE004702) 50S ribosomal protein L35 [Pseudomonas aeruginosa PAO1]
Identities = 64/64 (100%), Positives = 64/64 (100%)
Sequence:
ATGCCAAAGATGAAGACCAAAAGTGGCGCGGCCAAGCGCTTCAAGAAGACTGCTGGTGGCCTCAAGCACAAG
CACGCCTTCAAGAGCCACATCCTGACCAAGATGACCACCAAGCGTAAGCGTCAACTGCGCGGCACCTCGATG
CTGAACAAGTCTGACGTTGCGCGCGTAGAACGCTCCCTGCGTCTGCGCTGA
Translation:
MPKMKTKSGAAKRFKKTAGGLKHKHAFKSHILTKMTTKRKRQLRGTSMLNKSDVARVERSLRLR*
AnnotationID:5442GeneID:5437
AnnotatorUID: diggins
Modification Date/Time: 2004-12-08 08:08:43
Gene Name:rpmI
Confidence Code:2
GeneProduct:50S ribosomal protein L35
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0291,pfam01632
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55891.1| (AE016864) ribosomal protein L35 [Pseudomonas syringae pv. tomato
          str. DC3000]
          Length = 64

 Score =  110 bits (275), Expect = 2e-24
 Identities = 54/64 (84%), Positives = 60/64 (93%)

>gb|AAD34788.1|AF136400_2 (AF136400) ribosomal protein L35 [Pseudomonas fluorescens]
          Length = 64

 Score =  110 bits (275), Expect = 2e-24
 Identities = 54/64 (84%), Positives = 60/64 (93%)

>gb|AAL87032.1|AF332624_3 (AF332624) ribosomal protein L35 [Azotobacter vinelandii]
          Length = 64

 Score =  109 bits (272), Expect = 4e-24
 Identities = 53/64 (82%), Positives = 58/64 (90%)








 
Structural Features:
COG0291, RpmI, Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]

pfam01632, Ribosomal protein L35.






   
Genomic Context:






   
Comment:


















    ReferenceID:10872




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28020




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36292




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5437_cdd.html


    		




 
URL:

















    ReferenceID:36381




  
Author/Investigator(s):
        Kolibachuk D, Rouhbakhsh D, Baumann P.





  
Title:
        Aromatic amino acid biosynthesis in Buchnera aphidicola (endosymbiont of aphids): cloning and sequencing of a DNA fragment containing aroH-thrS-infC-rpmI-rplT.




  
PubMed:
        7766160


MedLine:
        




    
Source:
Curr Microbiol. 1995 May;30(5):313-6.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7766160

















    ReferenceID:36385




  
Author/Investigator(s):
        Pon CL, Brombach M, Thamm S, Gualerzi CO.





  
Title:
        Cloning and characterization of a gene cluster from Bacillus stearothermophilus comprising infC, rpmI and rplT.




  
PubMed:
        2779520


MedLine:
        




    
Source:
Mol Gen Genet. 1989 Aug;218(2):355-7.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2779520

















    ReferenceID:36387




  
Author/Investigator(s):
        Wada A, Sako T.





  
Title:
        Primary structures of and genes for new ribosomal proteins A and B in Escherichia coli.




  
PubMed:
        3298224


MedLine:
        




    
Source:
J Biochem (Tokyo). 1987 Mar;101(3):817-20.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=3298224









           
Homologs By Global Alignment 

           

       



     
Gene ID:5437
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7832
                           PA2742_tr
                           translation of PA2742
                           64
                           99.99
                           99.99
                           0
                           320.0
     

     
     
196556
                           gb|AAG06130.1|AE004702_7
                           (AE004702) 50S ribosomal protein L35 [Pseudomonas aeruginosa PAO1]
                           64
                           99.99
                           99.99
                           0
                           320.0
     

     
     
196557
                           gb|AAO55891.1|
                           (AE016864) ribosomal protein L35 [Pseudomonas syringae pv. tomato str. DC3000]
                           64
                           84.37
                           93.75
                           0
                           275.0
     

     
     
196558
                           gb|AAD34788.1|AF136400_2
                           (AF136400) ribosomal protein L35 [Pseudomonas fluorescens]
                           64
                           84.37
                           93.75
                           0
                           275.0
     

     
     
196559
                           gb|AAB05015.1|
                           (U44118) ribosomal protein L35 [Pseudomonas syringae pv. syringae]
                           64
                           84.37
                           93.75
                           0
                           275.0
     

     






      

          
GC ORFID: 48439How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2742Glimmer Score: 

          
Start: 2484172Stop: 2483978

          
Length: 195


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2742 translation of PA2742Homolog Bit Score 127.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1165 (ORF: BLASTX 110.0), t_PA2742 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCAAAGATGAAGACCAAAAGTGGCGCGGCCAAGCGCTTCAAGAAGACTGCTGGTGGCCTCAAGCACAAG 
CACGCCTTCAAGAGCCACATCCTGACCAAGATGACCACCAAGCGTAAGCGTCAACTGCGCGGCACCTCGATG 
CTGAACAAGTCTGACGTTGCGCGCGTAGAACGCTCCCTGCGTCTGCGCTGA