ViewGene

Locus Name:
GeneID:
Location:

GeneID:5436
TrivialName: PA14_71380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71380
PAO1 Ortholog Locus:PA5408
Sequence Length:177
Protein Length:58
Start: 6357460
Stop: 6357284
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08793.1|AE004953_7 (AE004953) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 58/58 (100%), Positives = 58/58 (100%)
Sequence:
GTGGCGGCGAAGCCGGCGGAGGAAACGCGCTGGTGCCTGTGGCGCCAGGACGACAACGGCAATGCCTTCGTC
ATGCGCCGCGACCTGACGCGCGACGAGGCCTGCGCGCTGGTCAAGGACTACCAGGCGCGCGGGCATCGGCAG
CTGTATTGGGCGAGTCCGCAGGCGCGCGACTAG
Translation:
MAAKPAEETRWCLWRQDDNGNAFVMRRDLTRDEACALVKDYQARGHRQLYWASPQARD*
AnnotationID:5441GeneID:5436
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 11:11:24
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5408
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:15344
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28018
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5436

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7831 PA5408_tr translation of PA5408 58 99.99 99.99 0 321.0
196555 gb|AAG08793.1|AE004953_7 (AE004953) hypothetical protein PA5408 [Pseudomonas aeruginosa PAO1] 58 98.27 99.99 0 318.0
GC ORFID: 48438How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5408Glimmer Score:
Start: 5621149Stop: 5620973
Length: 177
Start Codon: GTGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA5408 translation of PA5408Homolog Bit Score 128.0
Other Homologs: t_PA5408 (ORF: GLIMMER)
GC ORF Sequence
GTGGCGGCGAAGCCGGCGGAGGAAACGCGCTGGTGCCTGTGGCGCCAGGACGACAACGGCAATGCCTTCGTC
ATGCGCCGCGACCTGACGCGCGACGAGGCCTGCGCGCTGGTCAAGGACTACCAGGCGCGCGGGCATCGGCAG
CTGTATTGGGCGAGTCCGCAGGCGCGCGACTAG