ViewGene

Locus Name:
GeneID:
Location:

GeneID:5432
TrivialName: PA14_72350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72350
PAO1 Ortholog Locus:PA5480
Sequence Length:195
Protein Length:64
Start: 6444651
Stop: 6444845
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08865.1|AE004960_8 (AE004960) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 62/64 (96%), Positives = 62/64 (96%)
Sequence:
GTGCAAGGCCCGGGAGCCTCGTGCCCATCCTGGGAAGTTGAAAGTCGCTCATCATCGCTGCGATGGATGGTC
GCAGGACACGCAACGCCGTCCGGCACGCCATCGCCGGCTGTGGATAAGCGGCACTCTGTGGATAACCGCGCG
GTAAAGCCCTTCTGGGAGGGCGCCTCGGAACGCGCGGGTGGTCGATTGTAA
Translation:
MQGPGASCPSWEVESRSSSLRWMVAGHATPSGTPSPAVDKRHSVDNRAVKPFWEGASERAGGRL*
AnnotationID:5437GeneID:5432
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 07:07:32
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA5480
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:15342
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28010
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5432

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7825 PA5480_tr translation of PA5480 64 96.87 96.87 0 327.0
196520 gb|AAG08865.1|AE004960_8 (AE004960) hypothetical protein PA5480 [Pseudomonas aeruginosa PAO1] 64 95.31 96.87 0 324.0
GC ORFID: 48434How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5480Glimmer Score:
Start: 5708340Stop: 5708534
Length: 195
Start Codon: GTGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA5480 translation of PA5480Homolog Bit Score 130.0
Other Homologs:
GC ORF Sequence
GTGCAAGGCCCGGGAGCCTCGTGCCCATCCTGGGAAGTTGAAAGTCGCTCATCATCGCTGCGATGGATGGTC
GCAGGACACGCAACGCCGTCCGGCACGCCATCGCCGGCTGTGGATAAGCGGCACTCTGTGGATAACCGCGCG
GTAAAGCCCTTCTGGGAGGGCGCCTCGGAACGCGCGGGTGGTCGATTGTAA