ViewGene

Locus Name:
GeneID:
Location:

GeneID:5431
TrivialName: PA14_65260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65260
PAO1 Ortholog Locus:PA4940
Sequence Length:186
Protein Length:61
Start: 5816211
Stop: 5816026
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08325.1|AE004907_3 (AE004907) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 61/61 (100%), Positives = 61/61 (100%)
Sequence:
ATGTGGCAGGAATTCGGCATCGCTTTTTGTCTCGTGCTGGTGCTGGAAGGCATCCTGCCGTTCCTGTGTCCG
CGACAATGGCGCGAGGCGGTCACCGGCATCGGCCGGCTGAGCGACCGTCACCTGCGTCTCGTGGGGCTGGGC
AGCATGCTGCTCGGCACCCTGCTTCTTTACTGGATTCACTGA
Translation:
MWQEFGIAFCLVLVLEGILPFLCPRQWREAVTGIGRLSDRHLRLVGLGSMLLGTLLLYWIH*
AnnotationID:5436GeneID:5431
AnnotatorUID: diggins
Modification Date/Time: 2005-03-13 14:02:17
Gene Name:
Confidence Code:3
GeneProduct:putative transmembrane protein
Cell Localization:()
Synonyms:PA4940
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAD14926.1| (AL646063) HYPOTHETICAL TRANSMEMBRANE PROTEIN [Ralstonia
          solanacearum]
          Length = 66

 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 27/54 (50%), Positives = 36/54 (66%)
Structural Features:
Genomic Context:
Comment:
ReferenceID:10860
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28008
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35076
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5431_cdd.html
URL:
Homologs By Global Alignment
Gene ID:5431

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7824 PA4940_tr translation of PA4940 61 99.99 99.99 0 328.0
196519 gb|AAG08325.1|AE004907_3 (AE004907) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 61 99.99 99.99 0 328.0
GC ORFID: 48433How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4940Glimmer Score:
Start: 5079892Stop: 5079707
Length: 186
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4940 translation of PA4940Homolog Bit Score 130.0
Other Homologs: t_PA4940 (ORF: GLIMMER)
GC ORF Sequence
ATGTGGCAGGAATTCGGCATCGCTTTTTGTCTCGTGCTGGTGCTGGAAGGCATCCTGCCGTTCCTGTGTCCG
CGACAATGGCGCGAGGCGGTCACCGGCATCGGCCGGCTGAGCGACCGTCACCTGCGTCTCGTGGGGCTGGGC
AGCATGCTGCTCGGCACCCTGCTTCTTTACTGGATTCACTGA