ViewGene
Locus Name:
GeneID:
Location:

GeneID:5430
TrivialName: PA14_55940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55940
PAO1 Ortholog Locus:PA4306
Sequence Length:213
Protein Length:70
Start: 4994409
Stop: 4994621
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07694.1|AE004847_1 (AE004847) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 67/69 (97%), Positives = 67/69 (97%)
Sequence:
ATGAAGAACCTGACTCTGCTCGTGTATTGCAAAGTTCGCGCATTCCTGGCGGACGAAGAAGGGGCAAATGCC
ATCGAATACGCGGTTATCGCCGGTTTGATCGCGGTGGCTCTGATTGCCGTATTGAGTCCCACGGACAGCGGT
ATCGTCGGCGGTCTGAAAGCCTTCTTCGACGGCGTCGGCACCAAAGTCGGCGGACTGGCTCCGGACTGA
Translation:
MKNLTLLVYCKVRAFLADEEGANAIEYAVIAGLIAVALIAVLSPTDSGIVGGLKAFFDGVGTKVGGLAPD*
AnnotationID:5435GeneID:5430
AnnotatorUID: diggins
Modification Date/Time: 2005-04-04 08:08:58
Gene Name:
Confidence Code:3
GeneProduct:putative pilus assembly protein
Cell Localization:()
Synonyms:PA4306
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3847,pfam04964
Secondary Functional Category(ies):intracellular trafficking and secretion
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3847, Flp, Flp pilus assembly protein, pilin Flp 
[Intracellular trafficking and secretion]
CD-Length = 58 residues, 100.0% aligned
Score = 49.9 bits (119), Expect = 6e-08
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 4/62 (6%)

pfam04964, Flp_Fap, Flp/Fap pilin component.
CD-Length = 47 residues, 100.0% aligned
Score = 40.9 bits (96), Expect = 4e-05
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 4/51 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10858




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28006




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36658




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5430_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5430
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7823
                           PA4306_tr
                           translation of PA4306
                           72
                           93.05
                           93.05
                           2
                           328.0
     

     
     
196518
                           gb|AAG07694.1|AE004847_1
                           (AE004847) hypothetical protein PA4306 [Pseudomonas aeruginosa PAO1]
                           72
                           93.05
                           93.05
                           2
                           328.0
     

     






      

          
GC ORFID: 48432How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4306Glimmer Score: 

          
Start: 4258085Stop: 4258297

          
Length: 213


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4306 translation of PA4306Homolog Bit Score 131.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAAGAACCTGACTCTGCTCGTGTATTGCAAAGTTCGCGCATTCCTGGCGGACGAAGAAGGGGCAAATGCC 
ATCGAATACGCGGTTATCGCCGGTTTGATCGCGGTGGCTCTGATTGCCGTATTGAGTCCCACGGACAGCGGT 
ATCGTCGGCGGTCTGAAAGCCTTCTTCGACGGCGTCGGCACCAAAGTCGGCGGACTGGCTCCGGACTGA