ViewGene

Locus Name:
GeneID:
Location:

GeneID:543
TrivialName: PA14_44910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44910
PAO1 Ortholog Locus:PA1510
Sequence Length:1710
Protein Length:569
Start: 4003314
Stop: 4005023
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04899.1|AE004579_11 (AE004579) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 550/569 (96%), Positives = 559/569 (98%)
Sequence:
ATGAGCAGCGAACCGCTCGAGCCGAATCAGGATGTGATCATCCCTCGCTCTCGCGACAGTCTGGGACGGCCT
GTCTACAAGGCTCAGTTGACCCGTACCGACAACCAGAGCGAAAAGGTGGCACTGGTTCGGCAGACCGCTCCC
CTGCCGGTGATCTTCATTCCGGGGATCATGGGAACCAACCTGCGCAACAAGGCAGACAAGAGCAAGGTCTGG
AGGCCGCCGAACGGTCTCTGGCCCATGGATGACCTGTTTGCCTCAATCGGTGCGTTATGGACCTGGTATTGG
CGAGATGCAAAGGCTCGTCAAAGATTGCTGAAAGCGGAGAGAGTGGAAGTCGATGACCAGGGTACGATCGAT
GTCGGTCAATCTGGTTTGTCCGAAGAAGCTGCCCGCCTGCGCGGCTGGGGCAAGGTCATGCGCAGTGCGTAT
AACCCGGTCATGGGTTTAATGGAGAGGCGACTGGATAACATCGTCAGCCGCCGGGAACTCCAGGCATGGTGG
AATGACGAAGCCCTCTCTCCTCCTGGAGATCAGGGTGAGGAGCAGGGAAAAGTTGCGCCGATCGATGAAGAG
GAATTGCTCAAGGCCAGCCGATACCAGTTCGATGTCTGGTGCGCCGGTTATAACTGGCTACAGTCCAACCGG
CAATCGGCGCTGGATGTACGCGACTACATCGAGAACACGGTGTTGCCTTTCTACCAGAAGGAGTATGGTCTC
GATCCCGGGCAAGTGAGTCGTATGAAAGTCATTCTGGTCACCCACTCGATGGGAGGGCTGGTGGCGCGGGCC
TTGACGCAGTTGCACGGCTATGAGCGCGTATTGGGGGTGGTACATGGCGTACAACCTGCGACGGGTTCCTCA
ACCATCTACCATCATATGCGCTGTGGCTATGAAGGTATCGCACAGGTCGTGCTGGGACGAAATGCCGGTGAA
GTGACAGCCGTTGTCGCCAATTCGGCCGGCGCGCTGGAGTTGGCCCCTAGCGCCGAATACCGGGAAGGACGT
CCCTGGCTGTTTCTGTGCGACGCGCAGGGGCAGGTGCTCAAGGATATCGATGGAAAGCCTCGGGCTTATCCG
CAGAATCAGGACCCTTATGAAGAGATATACAAGAGCTCTACGTGGTATGGATTGGTGCCTGAGCAAAATGCA
CAATATCTGGACATGTCAGACAAAAAAGAAAGTTTAAGAGTTGGCCCCCGTGATAACTTTGAAGACTTGATA
GATAGCATTGCTAAGTTTCATGGTGAATTGTCAGCAGCAGGCTATCACTCAGAGACCTATGCCCATTACGGA
GCTGACGATAGCCGCCATAGTTGGCGCGACCTGATCTGGAAGGGTGACCCTACCCCTCTGGAGACCCCTGGT
GCCACACTCAACGACGATGAGAACGGCACTTACAACAGTTGGTTCCGCCGGGGCTTGCCCACCATAGTGCAG
GGTCCGCTGGAGACGGGAAATCCTCTGGACGCTTCCGGTAGCGGAGGTGACGAAACGGTACCGACCGACTCC
GGCCAGGCGCCTGCCCTGGCGGGCGTCAAGGCCAGCTTTCGGCATGGCAGCAAGGGCAAGGGACAGGCCAAT
ACAAAACGGGGCTATGAGCACCAGGAGAGTTACAACGATGCTCGTGCTCAATGGGCAGCGCTATATGGGGTG
ATCAAAATCACCCAGTTGGCGGATTGGCATCCTAATGACAAAGGAGGGACATGA
Translation:
MSSEPLEPNQDVIIPRSRDSLGRPVYKAQLTRTDNQSEKVALVRQTAPLPVIFIPGIMGTNLRNKADKSKVW
RPPNGLWPMDDLFASIGALWTWYWRDAKARQRLLKAERVEVDDQGTIDVGQSGLSEEAARLRGWGKVMRSAY
NPVMGLMERRLDNIVSRRELQAWWNDEALSPPGDQGEEQGKVAPIDEEELLKASRYQFDVWCAGYNWLQSNR
QSALDVRDYIENTVLPFYQKEYGLDPGQVSRMKVILVTHSMGGLVARALTQLHGYERVLGVVHGVQPATGSS
TIYHHMRCGYEGIAQVVLGRNAGEVTAVVANSAGALELAPSAEYREGRPWLFLCDAQGQVLKDIDGKPRAYP
QNQDPYEEIYKSSTWYGLVPEQNAQYLDMSDKKESLRVGPRDNFEDLIDSIAKFHGELSAAGYHSETYAHYG
ADDSRHSWRDLIWKGDPTPLETPGATLNDDENGTYNSWFRRGLPTIVQGPLETGNPLDASGSGGDETVPTDS
GQAPALAGVKASFRHGSKGKGQANTKRGYEHQESYNDARAQWAALYGVIKITQLADWHPNDKGGT*
AnnotationID:552GeneID:543
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 07:07:11
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1510
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAD17920.1| (AL646080) PUTATIVE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
          Length = 497

 Score =  542 bits (1397), Expect = e-153
 Identities = 271/503 (53%), Positives = 347/503 (68%), Gaps = 17/503 (3%)
Structural Features:
Genomic Context:
Comment:
ReferenceID:1089
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18231
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:543

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
942 PA1510_tr translation of PA1510 569 96.66 98.24 0 2957.0
37781 gb|AAG04899.1|AE004579_11 (AE004579) hypothetical protein PA1510 [Pseudomonas aeruginosa PAO1] 569 96.66 98.24 0 2957.0
37782 emb|CAD17920.1| (AL646080) PUTATIVE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum] 577 47.14 60.31 88 1401.0
GC ORFID: 43545How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1510Glimmer Score:
Start: 950595Stop: 948886
Length: 1710
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1510 translation of PA1510Homolog Bit Score 1143.0
Other Homologs: t_PA1510 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCAGCGAACCGCTCGAGCCGAATCAGGATGTGATCATCCCTCGCTCTCGCGACAGTCTGGGACGGCCT
GTCTACAAGGCTCAGTTGACCCGTACCGACAACCAGAGCGAAAAGGTGGCACTGGTTCGGCAGACCGCTCCC
CTGCCGGTGATCTTCATTCCGGGGATCATGGGAACCAACCTGCGCAACAAGGCAGACAAGAGCAAGGTCTGG
AGGCCGCCGAACGGTCTCTGGCCCATGGATGACCTGTTTGCCTCAATCGGTGCGTTATGGACCTGGTATTGG
CGAGATGCAAAGGCTCGTCAAAGATTGCTGAAAGCGGAGAGAGTGGAAGTCGATGACCAGGGTACGATCGAT
GTCGGTCAATCTGGTTTGTCCGAAGAAGCTGCCCGCCTGCGCGGCTGGGGCAAGGTCATGCGCAGTGCGTAT
AACCCGGTCATGGGTTTAATGGAGAGGCGACTGGATAACATCGTCAGCCGCCGGGAACTCCAGGCATGGTGG
AATGACGAAGCCCTCTCTCCTCCTGGAGATCAGGGTGAGGAGCAGGGAAAAGTTGCGCCGATCGATGAAGAG
GAATTGCTCAAGGCCAGCCGATACCAGTTCGATGTCTGGTGCGCCGGTTATAACTGGCTACAGTCCAACCGG
CAATCGGCGCTGGATGTACGCGACTACATCGAGAACACGGTGTTGCCTTTCTACCAGAAGGAGTATGGTCTC
GATCCCGGGCAAGTGAGTCGTATGAAAGTCATTCTGGTCACCCACTCGATGGGAGGGCTGGTGGCGCGGGCC
TTGACGCAGTTGCACGGCTATGAGCGCGTATTGGGGGTGGTACATGGCGTACAACCTGCGACGGGTTCCTCA
ACCATCTACCATCATATGCGCTGTGGCTATGAAGGTATCGCACAGGTCGTGCTGGGACGAAATGCCGGTGAA
GTGACAGCCGTTGTCGCCAATTCGGCCGGCGCGCTGGAGTTGGCCCCTAGCGCCGAATACCGGGAAGGACGT
CCCTGGCTGTTTCTGTGCGACGCGCAGGGGCAGGTGCTCAAGGATATCGATGGAAAGCCTCGGGCTTATCCG
CAGAATCAGGACCCTTATGAAGAGATATACAAGAGCTCTACGTGGTATGGATTGGTGCCTGAGCAAAATGCA
CAATATCTGGACATGTCAGACAAAAAAGAAAGTTTAAGAGTTGGCCCCCGTGATAACTTTGAAGACTTGATA
GATAGCATTGCTAAGTTTCATGGTGAATTGTCAGCAGCAGGCTATCACTCAGAGACCTATGCCCATTACGGA
GCTGACGATAGCCGCCATAGTTGGCGCGACCTGATCTGGAAGGGTGACCCTACCCCTCTGGAGACCCCTGGT
GCCACACTCAACGACGATGAGAACGGCACTTACAACAGTTGGTTCCGCCGGGGCTTGCCCACCATAGTGCAG
GGTCCGCTGGAGACGGGAAATCCTCTGGACGCTTCCGGTAGCGGAGGTGACGAAACGGTACCGACCGACTCC
GGCCAGGCGCCTGCCCTGGCGGGCGTCAAGGCCAGCTTTCGGCATGGCAGCAAGGGCAAGGGACAGGCCAAT
ACAAAACGGGGCTATGAGCACCAGGAGAGTTACAACGATGCTCGTGCTCAATGGGCAGCGCTATATGGGGTG
ATCAAAATCACCCAGTTGGCGGATTGGCATCCTAATGACAAAGGAGGGACATGA