ViewGene
Locus Name:
GeneID:
Location:

GeneID:5429
TrivialName: PA14_19590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19590
PAO1 Ortholog Locus:PA3441
Sequence Length:216
Protein Length:71
Start: 1693117
Stop: 1693332
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06829.1|AE004765_2 (AE004765) probable molybdopterin-binding protein [Pseudomonas aeruginosa PAO1]
Identities = 71/71 (100%), Positives = 71/71 (100%)
Sequence:
ATGACCATCAAAGCCATCAACGTTCGTAACCAGTTCAAGGGCACCGTGAAGGAAATCATCGAAGGGCCGGTA
TTGTCCGAGATCGACGTGCAGACCGCCGCCGGGATCGTCACTTCGGTGATCACCACGCGTTCGGTGAAGGAA
CTGGAGCTGGCCATCGGTAGCGAAGTGATCGCCTTCGTCAAGTCCACCGAGGTATCCATCGCCAAGCTGTGA
Translation:
MTIKAINVRNQFKGTVKEIIEGPVLSEIDVQTAAGIVTSVITTRSVKELELAIGSEVIAFVKSTEVSIAKL*
AnnotationID:5434GeneID:5429
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 18:06:45
Gene Name:
Confidence Code:3
GeneProduct:putative molybdopterin-binding protein
Cell Localization:()
Synonyms:ssuF
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3585
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAC31908.1| (AF075709) putative molybdopterin-binding protein [Pseudomonas
          putida]
          Length = 71

 Score =  127 bits (319), Expect = 1e-29
 Identities = 67/71 (94%), Positives = 70/71 (98%)

>gb|AAO58739.1| (AE016875) molybdenum-pterin binding domain protein [Pseudomonas
          syringae pv. tomato str. DC3000]
          Length = 71

 Score =  122 bits (306), Expect = 5e-28
 Identities = 63/71 (88%), Positives = 68/71 (95%)

>gb|AAN81741.1|AE016765_143 (AE016765) Potential molybdenum-pterin-binding-protein [Escherichia
           coli CFT073]
          Length = 155

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 1/64 (1%)






 
Structural Features:
COG3585, MopI, Molybdopterin-binding protein [Coenzyme metabolism]
CD-Length = 69 residues, 100.0% aligned
Score = 61.5 bits (149), Expect = 2e-11
Identities = 35/69 (50%), Positives = 48/69 (69%), Gaps = 1/69 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10856




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28004




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32127




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5429_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5429
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7822
                           PA3441_tr
                           translation of PA3441
                           71
                           99.99
                           99.99
                           0
                           330.0
     

     
     
196512
                           gb|AAG06829.1|AE004765_2
                           (AE004765) probable molybdopterin-binding protein [Pseudomonas aeruginosa PAO1]
                           71
                           99.99
                           99.99
                           0
                           330.0
     

     
     
196513
                           gb|AAC31908.1|
                           (AF075709) putative molybdopterin-binding protein [Pseudomonas putida]
                           71
                           94.36
                           98.59
                           0
                           319.0
     

     
     
196514
                           gb|AAN65873.1|AE016215_8
                           (AE016774) organosulfonate utilization protein SsuF [Pseudomonas putida KT2440]
                           71
                           92.95
                           98.59
                           0
                           316.0
     

     
     
196515
                           dbj|BAC00976.1|
                           (AB086390) molybdopterin-binding protein homologue [Pseudomonas putida]
                           71
                           92.95
                           98.59
                           0
                           316.0
     

     






      

          
GC ORFID: 48431How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3441Glimmer Score: 

          
Start: 3260815Stop: 3260600

          
Length: 216


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3441 translation of PA3441Homolog Bit Score 131.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6503 (ORF: BLASTX 122.0), t_PA3441 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCATCAAAGCCATCAACGTTCGTAACCAGTTCAAGGGCACCGTGAAGGAAATCATCGAAGGGCCGGTA 
TTGTCCGAGATCGACGTGCAGACCGCCGCCGGGATCGTCACTTCGGTGATCACCACGCGTTCGGTGAAGGAA 
CTGGAGCTGGCCATCGGTAGCGAAGTGATCGCCTTCGTCAAGTCCACCGAGGTATCCATCGCCAAGCTGTGA