ViewGene
Locus Name:
GeneID:
Location:

GeneID:5428
TrivialName: PA14_32480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32480
PAO1 Ortholog Locus:PA2486
Sequence Length:195
Protein Length:64
Start: 2823706
Stop: 2823512
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05874.1|AE004676_6 (AE004676) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 64/64 (100%), Positives = 64/64 (100%)
Sequence:
ATGCTCTCAGCCCGCTCCCGCAAGGCCCCGACCTATGGCGTCACCTATGTGAGCCTCGAGGATTGCACCCTG
CACTTCGAGACCGAGTACATCATCGAGCGCCGCGACGGCAGCCTCGCGCACATGCCGATGCGCACGCCGGTC
AGTGAGCGCGAAGCCCTGCAACGCCTGATCGAAAGCTGCATCGACGACTGA
Translation:
MLSARSRKAPTYGVTYVSLEDCTLHFETEYIIERRDGSLAHMPMRTPVSEREALQRLIESCIDD*
AnnotationID:5433GeneID:5428
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 15:03:24
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2486
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10854




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28002




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5428
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7821
                           PA2486_tr
                           translation of PA2486
                           64
                           99.99
                           99.99
                           0
                           330.0
     

     
     
196511
                           gb|AAG05874.1|AE004676_6
                           (AE004676) hypothetical protein PA2486 [Pseudomonas aeruginosa PAO1]
                           64
                           99.99
                           99.99
                           0
                           330.0
     

     






      

          
GC ORFID: 48430How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2486Glimmer Score: 

          
Start: 2130218Stop: 2130412

          
Length: 195


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2486 translation of PA2486Homolog Bit Score 131.0

          
Other Homologs:  t_PA2486 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCTCAGCCCGCTCCCGCAAGGCCCCGACCTATGGCGTCACCTATGTGAGCCTCGAGGATTGCACCCTG 
CACTTCGAGACCGAGTACATCATCGAGCGCCGCGACGGCAGCCTCGCGCACATGCCGATGCGCACGCCGGTC 
AGTGAGCGCGAAGCCCTGCAACGCCTGATCGAAAGCTGCATCGACGACTGA