ViewGene
Locus Name:
GeneID:
Location:

GeneID:5427
TrivialName: PA14_39180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39180
PAO1 Ortholog Locus:
Sequence Length:435
Protein Length:144
Start: 3489849
Stop: 3489415
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05348.1|AE004622_10 (AE004622) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 141/144 (97%), Positives = 143/144 (99%)
Sequence:
GTGACGCGGGCCCAGGCACGGCCGGCGCCGACTCCGCCGAGCGCGTTGCAGCGCCCGTTGGCGAAGCTGCTG
GTCCTGCTGATCCTCTGCGTGCTGCCGGCCGCCGGCGCCTGGCGGATGTACCTGGACGGACAGGCCCTCTGG
CCGCTGCTGGCCTATCCGCTGGCCAGCCTGCTCGCATTCGCCCTCTACTGGCAGGACAAGCGCAGCGCCGCA
CGCGGCGACTGGCGTACCCCGGAGGTCCGCCTGCACCTGTTCGAGCTGCTTGGCGGCTGGCCTGGCGCGCTG
GTCGCGCAGCAGGCGTTCCGCCACAAGACCCGCAAGCTCTCGTTCCAACTGGTGTTCTGGGGCATCGTCCTG
CTGCACCAGCTGTTCTGGCTCGACAGCCTGCTCGGCGGGCGCCTGTCCGCCGCGCTGTTGCAGTGGATCGGC
TGA
Translation:
MTRAQARPAPTPPSALQRPLAKLLVLLILCVLPAAGAWRMYLDGQALWPLLAYPLASLLAFALYWQDKRSAA
RGDWRTPEVRLHLFELLGGWPGALVAQQAFRHKTRKLSFQLVFWGIVLLHQLFWLDSLLGGRLSAALLQWIG
*
AnnotationID:5432GeneID:5427
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 15:03:47
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3326
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3326, COG3326, Predicted membrane protein 
CD-Length = 94 residues, 100.0% aligned
Score = 92.6 bits (230), Expect = 2e-20
Identities = 44/95 (46%), Positives = 54/95 (56%), Gaps = 1/95 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:15340




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28000




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32756




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5427_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5427
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7820
                           PA1960_tr
                           translation of PA1960
                           240
                           59.16
                           59.58
                           96
                           751.0
     

     
     
196508
                           gb|AAG05348.1|AE004622_10
                           (AE004622) hypothetical protein PA1960 [Pseudomonas aeruginosa PAO1]
                           240
                           59.16
                           59.58
                           96
                           751.0
     

     
     
196509
                           gb|AAN68471.1|AE016479_11
                           (AE016784) conserved hypothetical protein [Pseudomonas putida KT2440]
                           148
                           51.35
                           59.45
                           27
                           376.0
     

     
     
196510
                           gb|AAO56627.1|
                           (AE016867) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           156
                           47.43
                           58.97
                           12
                           330.0
     

     






      

          
GC ORFID: 48429How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold7_revised_gene7252Glimmer Score: 

          
Start: 1464062Stop: 1464496

          
Length: 435


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold7_revised_gene7252 related to: gi|15597156|ref|NP_250650.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa] pir||G83401 hypothetical protein PA1960 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG05348.1|AE004622_10Homolog Bit Score 132.0

          
Other Homologs:  t_PA1960 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGACGCGGGCCCAGGCACGGCCGGCGCCGACTCCGCCGAGCGCGTTGCAGCGCCCGTTGGCGAAGCTGCTG 
GTCCTGCTGATCCTCTGCGTGCTGCCGGCCGCCGGCGCCTGGCGGATGTACCTGGACGGACAGGCCCTCTGG 
CCGCTGCTGGCCTATCCGCTGGCCAGCCTGCTCGCATTCGCCCTCTACTGGCAGGACAAGCGCAGCGCCGCA 
CGCGGCGACTGGCGTACCCCGGAGGTCCGCCTGCACCTGTTCGAGCTGCTTGGCGGCTGGCCTGGCGCGCTG 
GTCGCGCAGCAGGCGTTCCGCCACAAGACCCGCAAGCTCTCGTTCCAACTGGTGTTCTGGGGCATCGTCCTG 
CTGCACCAGCTGTTCTGGCTCGACAGCCTGCTCGGCGGGCGCCTGTCCGCCGCGCTGTTGCAGTGGATCGGC 
TGA