ViewGene

Locus Name:
GeneID:
Location:

GeneID:5425
TrivialName: PA14_47010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47010
PAO1 Ortholog Locus:PA1333
Sequence Length:207
Protein Length:68
Start: 4189012
Stop: 4189218
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04722.1|AE004562_9 (AE004562) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 67/68 (98%), Positives = 67/68 (98%)
Sequence:
ATGAGCAAGTCCCTGATCGTCTCCCTGGCCGCCAGCCTGGTCGTCCTGGCCGGTTGCGCCAACCCGCCGCGC
AGCGTCGAGCGCCCCTACAGCGACGCCGAAATCAAGTCCTACGCCCTCGACAGCCTGGAACGCAGCGACCTC
TCGCCGAAGCGCCTCGACCAGTACCGCAGCGTGCTCGGCACGCCGCACCGGCAGACCCTCTAG
Translation:
MSKSLIVSLAASLVVLAGCANPPRSVERPYSDAEIKSYALDSLERSDLSPKRLDQYRSVLGTPHRQTL*
AnnotationID:5430GeneID:5425
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 07:07:25
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1333
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:10848
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27996
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5425

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7818 PA1333_tr translation of PA1333 68 98.52 98.52 0 332.0
196506 gb|AAG04722.1|AE004562_9 (AE004562) hypothetical protein PA1333 [Pseudomonas aeruginosa PAO1] 68 98.52 98.52 0 332.0
GC ORFID: 48427How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1333Glimmer Score:
Start: 764897Stop: 764691
Length: 207
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA1333 translation of PA1333Homolog Bit Score 132.0
Other Homologs: t_PA1333 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCAAGTCCCTGATCGTCTCCCTGGCCGCCAGCCTGGTCGTCCTGGCCGGTTGCGCCAACCCGCCGCGC
AGCGTCGAGCGCCCCTACAGCGACGCCGAAATCAAGTCCTACGCCCTCGACAGCCTGGAACGCAGCGACCTC
TCGCCGAAGCGCCTCGACCAGTACCGCAGCGTGCTCGGCACGCCGCACCGGCAGACCCTCTAG