ViewGene
Locus Name:
GeneID:
Location:

GeneID:5424
TrivialName: PA14_71900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71900
PAO1 Ortholog Locus:PA5446
Sequence Length:204
Protein Length:67
Start: 6408629
Stop: 6408832
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08831.1|AE004958_1 (AE004958) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 67/67 (100%), Positives = 67/67 (100%)
Sequence:
ATGGAACGTACCCTCGGTTCCAACACTTTCGACATCGCTCGCTCCAACCGCCGCAGCAGCAGCCTGCTGGGC
ACCATGAAACTGTGGCAGCGCCGCATCCAGAGCCGTCGCCAGCTGGCCCGTCTGGACTCCCGCCTGCTCGCC
GACGCCGGCATCAGCGAAGCCCAGCGCTACGCCGAGCTGAACAAGCCGTTCTGGCGCTAA
Translation:
MERTLGSNTFDIARSNRRSSSLLGTMKLWQRRIQSRRQLARLDSRLLADAGISEAQRYAELNKPFWR*
AnnotationID:5429GeneID:5424
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 20:08:38
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5446
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10846




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27994




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34638




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5424_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5424
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7817
                           PA5446_tr
                           translation of PA5446
                           67
                           99.99
                           99.99
                           0
                           336.0
     

     
     
196505
                           gb|AAG08831.1|AE004958_1
                           (AE004958) hypothetical protein PA5446 [Pseudomonas aeruginosa PAO1]
                           67
                           99.99
                           99.99
                           0
                           336.0
     

     






      

          
GC ORFID: 48426How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5446Glimmer Score: 

          
Start: 5672318Stop: 5672521

          
Length: 204


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA5446 translation of PA5446Homolog Bit Score 134.0

          
Other Homologs:  t_PA5446 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAACGTACCCTCGGTTCCAACACTTTCGACATCGCTCGCTCCAACCGCCGCAGCAGCAGCCTGCTGGGC 
ACCATGAAACTGTGGCAGCGCCGCATCCAGAGCCGTCGCCAGCTGGCCCGTCTGGACTCCCGCCTGCTCGCC 
GACGCCGGCATCAGCGAAGCCCAGCGCTACGCCGAGCTGAACAAGCCGTTCTGGCGCTAA