ViewGene
Locus Name:
GeneID:
Location:

GeneID:5423
TrivialName: PA14_71330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71330
PAO1 Ortholog Locus:PA5403
Sequence Length:207
Protein Length:68
Start: 6355782
Stop: 6355988
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08788.1|AE004953_2 (AE004953) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 68/68 (100%), Positives = 68/68 (100%)
Sequence:
ATGATCATCATCCGACTAGACGTCATCCTGGCGAAGAACAAGGTCCGCTCCAAGGAGCTGGCGGAAGCCATC
GGTATCACCGAACAGAACCTGTCCCTGCTGAAGAACGGCAAGGTCAAGGGCATCCGCCTCGACACCCTGGAG
AAGATCTGCGCCTTCCTGGACTGCCAGCCGGGCGACATCCTGGAATACGTCGCGGACGACTGA
Translation:
MIIIRLDVILAKNKVRSKELAEAIGITEQNLSLLKNGKVKGIRLDTLEKICAFLDCQPGDILEYVADD*
AnnotationID:5428GeneID:5423
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 11:11:15
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA5403
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3655
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC12373.1| (AP004594) transcriptional regulator [Oceanobacillus iheyensis
          HTE831]
          Length = 71

 Score = 88.6 bits (218), Expect = 7e-18
 Identities = 44/66 (66%), Positives = 50/66 (75%)

>gb|AAK25232.1| (AE005990) transcriptional regulator, Cro/CI family [Caulobacter
          crescentus CB15]
          Length = 75

 Score = 87.8 bits (216), Expect = 1e-17
 Identities = 41/61 (67%), Positives = 51/61 (83%)








 
Structural Features:
COG3655, Predicted transcriptional regulator [Transcription]
CD-Length = 73 residues,  93.2% aligned
Score = 89.5 bits (222), Expect = 7e-20
Identities = 48/68 (70%), Positives = 53/68 (77%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10844




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27992




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34671




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5423_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5423
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7816
                           PA5403_tr
                           translation of PA5403
                           68
                           99.99
                           99.99
                           0
                           336.0
     

     
     
196502
                           gb|AAG08788.1|AE004953_2
                           (AE004953) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           68
                           99.99
                           99.99
                           0
                           336.0
     

     
     
196503
                           emb|CAE16000.1|
                           (BX571871) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           73
                           75.34
                           80.82
                           5
                           273.0
     

     
     
196504
                           emb|CAE26371.1|
                           (BX572595) transcriptional regulator, XRE family [Rhodopseudomonas palustris CGA009]
                           69
                           69.56
                           84.05
                           1
                           252.0
     

     






      

          
GC ORFID: 48425How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5403Glimmer Score: 

          
Start: 5619471Stop: 5619677

          
Length: 207


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5403 translation of PA5403Homolog Bit Score 134.0

          
Other Homologs:  t_PA5403 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCATCATCCGACTAGACGTCATCCTGGCGAAGAACAAGGTCCGCTCCAAGGAGCTGGCGGAAGCCATC 
GGTATCACCGAACAGAACCTGTCCCTGCTGAAGAACGGCAAGGTCAAGGGCATCCGCCTCGACACCCTGGAG 
AAGATCTGCGCCTTCCTGGACTGCCAGCCGGGCGACATCCTGGAATACGTCGCGGACGACTGA