ViewGene
Locus Name:
GeneID:
Location:

GeneID:5421
TrivialName: PA14_51580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51580
PAO1 Ortholog Locus:
Sequence Length:204
Protein Length:67
Start: 4586130
Stop: 4585927
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP82954.1| (AY273870) hypothetical protein [Pseudomonas aeruginosa]
Identities = 67/67 (100%), Positives = 67/67 (100%)
Sequence:
GTGAGTAGTACTAAGAGTAAGCCGATAGCCAGGGGGCGTGGTGGCCCATTTGGGGAAGTGATGAAGAGGTGC
GGGCTTGTACCGGTTCGAGGAAGGAATAGACAGCAGACAGGATCGCTTGCGATGGGGCAGCAGGAAACCATC
AGCCCGTCCGTATCCAGAACTGCTGCTTGCAGCGTTAGGGGTGACTCCCTCATGCCCTAG
Translation:
MSSTKSKPIARGRGGPFGEVMKRCGLVPVRGRNRQQTGSLAMGQQETISPSVSRTAACSVRGDSLMP*
AnnotationID:5426GeneID:5421
AnnotatorUID: danlee
Modification Date/Time: 2005-08-26 15:03:45
Gene Name:RS09
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15338




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27988




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5421
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
196498
                           gb|AAP82954.1|
                           (AY273870) hypothetical protein [Pseudomonas aeruginosa]
                           67
                           98.50
                           99.99
                           0
                           338.0
     

     






      

          
GC ORFID: 48423How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RS09Glimmer Score: 

          
Start: 367777Stop: 367980

          
Length: 204


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_RS09 67 Homolog: No significant similarity () translation of RS09Homolog Bit Score 135.0

          
Other Homologs:  

          
GC ORF Sequence

           
GTGAGTAGTACTAAGAGTAAGCCGATAGCCAGGGGGCGTGGTGGCCCATTTGGGGAAGTGATGAAGAGGTGC 
GGGCTTGTACCGGTTCGAGGAAGGAATAGACAGCAGACAGGATCGCTTGCGATGGGGCAGCAGGAAACCATC 
AGCCCGTCCGTATCCAGAACTGCTGCTTGCAGCGTTAGGGGTGACTCCCTCATGCCCTAG