ViewGene
Locus Name:
GeneID:
Location:

GeneID:5420
TrivialName: PA14_01330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01330
PAO1 Ortholog Locus:PA0109
Sequence Length:210
Protein Length:69
Start: 129707
Stop: 129498
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03499.1|AE004449_8 (AE004449) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 68/69 (98%), Positives = 68/69 (98%)
Sequence:
ATGTTGAAAGTGGCGATCGTCCTGCTACTGCTGGCTACCCTGGTGAGCCTGTTCAGCGGCCTGTTCTTCCTG
GTCAAGGACCAGGGCCATGGTTCCCGCGTGGTCAATTCGCTGACCGTCCGCGTGGTGCTCGCCGCGGCGACC
CTGGCGCTGGTCGCCTGGGGCTTCTACAGCGGCGAGCTGAACAGCCACGCGCCCTGGCATTTCTGA
Translation:
MLKVAIVLLLLATLVSLFSGLFFLVKDQGHGSRVVNSLTVRVVLAAATLALVAWGFYSGELNSHAPWHF*
AnnotationID:5425GeneID:5420
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 19:07:35
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0109
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD85888.1| (BX321863) putative transmembrane protein [Nitrosomonas europaea
          ATCC 19718]
          Length = 63

 Score = 50.1 bits (118), Expect = 3e-06






 
Structural Features:
CDD Search: No hits at any threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10838




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27986




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5420
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7814
                           PA0109_tr
                           translation of PA0109
                           69
                           98.55
                           98.55
                           0
                           340.0
     

     
     
196497
                           gb|AAG03499.1|AE004449_8
                           (AE004449) hypothetical protein PA0109 [Pseudomonas aeruginosa PAO1]
                           69
                           98.55
                           98.55
                           0
                           340.0
     

     






      

          
GC ORFID: 48422How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0109Glimmer Score: 

          
Start: 5931046Stop: 5930837

          
Length: 210


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0109 translation of PA0109Homolog Bit Score 135.0

          
Other Homologs:  t_PA0109 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTGAAAGTGGCGATCGTCCTGCTACTGCTGGCTACCCTGGTGAGCCTGTTCAGCGGCCTGTTCTTCCTG 
GTCAAGGACCAGGGCCATGGTTCCCGCGTGGTCAATTCGCTGACCGTCCGCGTGGTGCTCGCCGCGGCGACC 
CTGGCGCTGGTCGCCTGGGGCTTCTACAGCGGCGAGCTGAACAGCCACGCGCCCTGGCATTTCTGA