ViewGene
Locus Name:
GeneID:
Location:

GeneID:542
TrivialName: PA14_33740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33740
PAO1 Ortholog Locus:PA2392
Sequence Length:1635
Protein Length:544
Start: 2995383
Stop: 2997017
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05780.1|AE004665_7 (AE004665) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 544/544 (100%), Positives = 544/544 (100%)
Sequence:
ATGACGGTTTCTCGACGCGGATTCATGGCGGGCCTGGCCCTTACCGGGGCGGCGGCGCTGCCGGTGGCTTAC
TACACACATCGTCATCTGACCCGCGAAGAGGAGCCGCAGACGCCTGACGAGGCTTCGCTCGACCTGGCGGCT
ACCGATGGCATACGACTGGGCGACCGCCTGCGCGGTCTATGGGATCTGCGCCTGGTAGGCGGTGATGCCGAA
CTGCCCGGGCTGCCTCGGGAGGGCTTGCAACTGGTGCTGGACGTGGCACCCAAGGGACGCGGCCTGATTGGC
TACCTGGATACTCCTGAACGTCTCCTCGCGGCGGAGCCGCCGCGCTTTCGTGTGCTTGGCGACTTGCTCGGA
GCCAGTTCTGCAAGCATCCGCTGGCGTTTGGTGGACCAGGCGAGCGGTTCCGTGGCACCGACTCACGATTGC
TCGGCGGTGTTCGACGAGGTCTGGGCAGACTATGCGAACGCGGGCGACGGAACTCTGAGCGGACGCATACAG
CGCCTGGAGCGTTCGCCGCTGTCGCCGAACGAGGATTTTCGTTTCGTTGCGGTAAAGCGTCACTTCCCCCTG
GCCCATGAGCGCATCGTGCTCAACGAGAAACTTCTCGGTTGGCTGGTGTCGCCGCAGCACCGACTGTTCCAC
CAGCTATGGCACGCTTCGCGGGACAAATGGCATCGGCTTTCGGAAAAACAACGCAATGCGTTGCGCGGAGTC
GGTTGGCAGCCCGGCCCGCTGGACCGCGAACGCGATGCGCGAGGGCCACGCAAGGATCGCAACGCCTCGGGT
ATCGACTTCTTTTTCATGCACCGGCACATGCTGCATACCGCGCGTTCCATGCAGGACCTGCCGTCCTGGGAG
CGTCTGCCGCGACCTGTGGTGCCGCTGGAGTACGATCGTCCCGGCTTCATCCGTTACTTCGACAATCCGGAC
GGGTTTTCCGTGCCTCCGGCCTGGGTGGCAGTGGATGACGACGAGTACAGCGAGTGGCTGCATGGCCTGAAA
AGCGCCGAGGCCTACCATGCCAATTTCCTGGTCTGGGAATCGCAGTACCAGGACCCGGCGTACCTGGCGAAG
TTGACCCTCGGCCAGTTCGGTTCGGAGCTGGAACTGGGCATGCATGACTGGCTGCACATGCGCTGGGCCTCG
GTGACGAGGGACCCCTCCAACGGCGCCCCGGTCATGACCGACCGTTTTCCGGCCGATTTTGCCCCGCGCTGG
TTCCGCCCGGAGAACGACTTCCTCGGCGACCCGTTTTCCTCCCATGTGAATCCGGTGTTCTGGTCGTTCCAC
GGCTGGATCGACGACCGCATCGAGGACTGGTATCGCGCCCACGAGCGTTTCCATCCTGGCGAAGTGCAGCGC
CGCGAAGTGGAGGGCATCCAATGGTTCGCGCCCGGTCGATGGGTCGAGGTCGGCGATCCCTGGCTGGGTCCG
GCGACCCATGGATGCGGGCTTTCGGATGTCCAGGCGAGCAGCAACTCGGTGGAGCTGGACGTGGAAACCATG
AAGCTGGCTTTGCGCATCATCTTCAGCGAAGAAGATCAACTGAGCGGCTGGCTCAAGCGTGCGCCGCGGCGG
CCCTGGTACGCGCGCAACCTGAAGCTGGCGCGCGACCAGCTCAGGCGCTGA
Translation:
MTVSRRGFMAGLALTGAAALPVAYYTHRHLTREEEPQTPDEASLDLAATDGIRLGDRLRGLWDLRLVGGDAE
LPGLPREGLQLVLDVAPKGRGLIGYLDTPERLLAAEPPRFRVLGDLLGASSASIRWRLVDQASGSVAPTHDC
SAVFDEVWADYANAGDGTLSGRIQRLERSPLSPNEDFRFVAVKRHFPLAHERIVLNEKLLGWLVSPQHRLFH
QLWHASRDKWHRLSEKQRNALRGVGWQPGPLDRERDARGPRKDRNASGIDFFFMHRHMLHTARSMQDLPSWE
RLPRPVVPLEYDRPGFIRYFDNPDGFSVPPAWVAVDDDEYSEWLHGLKSAEAYHANFLVWESQYQDPAYLAK
LTLGQFGSELELGMHDWLHMRWASVTRDPSNGAPVMTDRFPADFAPRWFRPENDFLGDPFSSHVNPVFWSFH
GWIDDRIEDWYRAHERFHPGEVQRREVEGIQWFAPGRWVEVGDPWLGPATHGCGLSDVQASSNSVELDVETM
KLALRIIFSEEDQLSGWLKRAPRRPWYARNLKLARDQLRR*
AnnotationID:551GeneID:542
AnnotatorUID: danlee
Modification Date/Time: 2005-07-06 12:12:55
Gene Name:pvdP
Confidence Code:1
GeneProduct:PvdP
Cell Localization:()
Synonyms:PA2392
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Pyoverdine synthesis
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:1087




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18229




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38189




  
Author/Investigator(s):
        Lamont IL, Martin LW.





  
Title:
        Identification and characterization of novel pyoverdine synthesis genes in Pseudomonas aeruginosa.




  
PubMed:
        12686626


MedLine:
        




    
Source:
Microbiology. 2003 Apr;149(Pt 4):833-42.






    
Reference Type: 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:542
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
941
                           PA2392_tr
                           translation of PA2392
                           544
                           99.99
                           99.99
                           0
                           2961.0
     

     
     
37778
                           gb|AAG05780.1|AE004665_7
                           (AE004665) hypothetical protein PA2392 [Pseudomonas aeruginosa PAO1]
                           544
                           99.99
                           99.99
                           0
                           2961.0
     

     
     
37779
                           gb|AAN69793.1|AE016615_9
                           (AE016789) conserved hypothetical protein [Pseudomonas putida KT2440]
                           544
                           61.58
                           73.16
                           4
                           1847.0
     

     
     
37780
                           emb|CAD73690.1|
                           (BX294140) conserved hypothetical protein [Pirellula sp.] [Pirellula sp. 1]
                           613
                           29.52
                           38.98
                           183
                           670.0
     

     






      

          
GC ORFID: 43544How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2392Glimmer Score: 

          
Start: 1958533Stop: 1956899

          
Length: 1635


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2392 translation of PA2392Homolog Bit Score 1145.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene959 (ORF: BLASTX 707.0), t_PA2392 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGGTTTCTCGACGCGGATTCATGGCGGGCCTGGCCCTTACCGGGGCGGCGGCGCTGCCGGTGGCTTAC 
TACACACATCGTCATCTGACCCGCGAAGAGGAGCCGCAGACGCCTGACGAGGCTTCGCTCGACCTGGCGGCT 
ACCGATGGCATACGACTGGGCGACCGCCTGCGCGGTCTATGGGATCTGCGCCTGGTAGGCGGTGATGCCGAA 
CTGCCCGGGCTGCCTCGGGAGGGCTTGCAACTGGTGCTGGACGTGGCACCCAAGGGACGCGGCCTGATTGGC 
TACCTGGATACTCCTGAACGTCTCCTCGCGGCGGAGCCGCCGCGCTTTCGTGTGCTTGGCGACTTGCTCGGA 
GCCAGTTCTGCAAGCATCCGCTGGCGTTTGGTGGACCAGGCGAGCGGTTCCGTGGCACCGACTCACGATTGC 
TCGGCGGTGTTCGACGAGGTCTGGGCAGACTATGCGAACGCGGGCGACGGAACTCTGAGCGGACGCATACAG 
CGCCTGGAGCGTTCGCCGCTGTCGCCGAACGAGGATTTTCGTTTCGTTGCGGTAAAGCGTCACTTCCCCCTG 
GCCCATGAGCGCATCGTGCTCAACGAGAAACTTCTCGGTTGGCTGGTGTCGCCGCAGCACCGACTGTTCCAC 
CAGCTATGGCACGCTTCGCGGGACAAATGGCATCGGCTTTCGGAAAAACAACGCAATGCGTTGCGCGGAGTC 
GGTTGGCAGCCCGGCCCGCTGGACCGCGAACGCGATGCGCGAGGGCCACGCAAGGATCGCAACGCCTCGGGT 
ATCGACTTCTTTTTCATGCACCGGCACATGCTGCATACCGCGCGTTCCATGCAGGACCTGCCGTCCTGGGAG 
CGTCTGCCGCGACCTGTGGTGCCGCTGGAGTACGATCGTCCCGGCTTCATCCGTTACTTCGACAATCCGGAC 
GGGTTTTCCGTGCCTCCGGCCTGGGTGGCAGTGGATGACGACGAGTACAGCGAGTGGCTGCATGGCCTGAAA 
AGCGCCGAGGCCTACCATGCCAATTTCCTGGTCTGGGAATCGCAGTACCAGGACCCGGCGTACCTGGCGAAG 
TTGACCCTCGGCCAGTTCGGTTCGGAGCTGGAACTGGGCATGCATGACTGGCTGCACATGCGCTGGGCCTCG 
GTGACGAGGGACCCCTCCAACGGCGCCCCGGTCATGACCGACCGTTTTCCGGCCGATTTTGCCCCGCGCTGG 
TTCCGCCCGGAGAACGACTTCCTCGGCGACCCGTTTTCCTCCCATGTGAATCCGGTGTTCTGGTCGTTCCAC 
GGCTGGATCGACGACCGCATCGAGGACTGGTATCGCGCCCACGAGCGTTTCCATCCTGGCGAAGTGCAGCGC 
CGCGAAGTGGAGGGCATCCAATGGTTCGCGCCCGGTCGATGGGTCGAGGTCGGCGATCCCTGGCTGGGTCCG 
GCGACCCATGGATGCGGGCTTTCGGATGTCCAGGCGAGCAGCAACTCGGTGGAGCTGGACGTGGAAACCATG 
AAGCTGGCTTTGCGCATCATCTTCAGCGAAGAAGATCAACTGAGCGGCTGGCTCAAGCGTGCGCCGCGGCGG 
CCCTGGTACGCGCGCAACCTGAAGCTGGCGCGCGACCAGCTCAGGCGCTGA