ViewGene

Locus Name:
GeneID:
Location:

GeneID:5419
TrivialName: PA14_11150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11150
PAO1 Ortholog Locus:PA4077
Sequence Length:207
Protein Length:68
Start: 971615
Stop: 971409
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07464.1|AE004823_10 (AE004823) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 68/68 (100%), Positives = 68/68 (100%)
Sequence:
ATGAGGAACCGGGTTCGCGAGTTGCGCGCGGAGCGCGGTTGGTCACAGGCGGAGCTGGCCGGAAAGCTGGAG
GTATCGCGGCAGACGGTGAACGCCATCGAAACCGGCCGCTACGACCCAAGCCTGCCCTTGGCCTTCAAGCTC
GCCCGGGTGTTCGGACTGGCGATAGAAGCGATCTTCGACGACCGGGAAGGCCAACTGGACTGA
Translation:
MRNRVRELRAERGWSQAELAGKLEVSRQTVNAIETGRYDPSLPLAFKLARVFGLAIEAIFDDREGQLD*
AnnotationID:5424GeneID:5419
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 07:07:58
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA4077
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1476
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAK24203.1| (AE005894) transcriptional regulator, Cro/CI family [Caulobacter
          crescentus CB15]
          Length = 64

 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 45/62 (72%), Positives = 56/62 (90%)

>gb|AAF11998.1|AE002075_2 (AE002075) transcriptional regulator, PbsX family [Deinococcus
          radiodurans]
          Length = 64

 Score = 92.8 bits (229), Expect = 4e-19
 Identities = 44/62 (70%), Positives = 54/62 (87%)

>gb|AAM38891.1| (AE012054) transcriptional regulator [Xanthomonas axonopodis pv.
          citri str. 306]
          Length = 66

 Score = 90.5 bits (223), Expect = 2e-18
 Identities = 43/66 (65%), Positives = 53/66 (80%)
Structural Features:
COG1476, Predicted transcriptional regulators [Transcription]
CD-Length = 68 residues,  97.1% aligned
Score = 90.7 bits (225), Expect = 3e-20
Identities = 38/66 (57%), Positives = 49/66 (74%)
Genomic Context:
Comment:
ReferenceID:10836
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27985
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36525
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5419_cdd.html
URL:
Homologs By Global Alignment
Gene ID:5419

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7813 PA4077_tr translation of PA4077 68 99.99 99.99 0 340.0
196496 gb|AAG07464.1|AE004823_10 (AE004823) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 68 99.99 99.99 0 340.0
GC ORFID: 48421How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4077Glimmer Score:
Start: 3982322Stop: 3982528
Length: 207
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4077 translation of PA4077Homolog Bit Score 135.0
Other Homologs: t_PA4077 (ORF: GLIMMER)
GC ORF Sequence
ATGAGGAACCGGGTTCGCGAGTTGCGCGCGGAGCGCGGTTGGTCACAGGCGGAGCTGGCCGGAAAGCTGGAG
GTATCGCGGCAGACGGTGAACGCCATCGAAACCGGCCGCTACGACCCAAGCCTGCCCTTGGCCTTCAAGCTC
GCCCGGGTGTTCGGACTGGCGATAGAAGCGATCTTCGACGACCGGGAAGGCCAACTGGACTGA