ViewGene
Locus Name:
GeneID:
Location:

GeneID:5418
TrivialName: PA14_15880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15880
PAO1 Ortholog Locus:PA3752
Sequence Length:195
Protein Length:64
Start: 1353267
Stop: 1353461
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07139.1|AE004794_4 (AE004794) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 64/64 (100%), Positives = 64/64 (100%)
Sequence:
GTGAACGAGCGACCGGTGGCTTCGCCCTGCGTGCATGTCTGCGCGCTGGACGAGCAGGACATCTGCATCGGC
TGCCAGCGCACGGCGGCCGAGATCACCCGCTGGGGCCTGATGAGCAACGACGAGCGCCGCGAGGTGCTCGGT
CGCTGTTTCGAGCGCGCCAAGGCGCAAGGGCTGGTCAGCGGTTCCGCCTGA
Translation:
MNERPVASPCVHVCALDEQDICIGCQRTAAEITRWGLMSNDERREVLGRCFERAKAQGLVSGSA*
AnnotationID:5423GeneID:5418
AnnotatorUID: diggins
Modification Date/Time: 2005-06-15 06:06:48
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3752
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3313
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3313, Predicted Fe-S protein 
CD-Length = 74 residues,  87.8% aligned
Score = 71.6 bits (175), Expect = 3e-14
Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 1/65 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:15336




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27983




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31806




  
Author/Investigator(s):
        





  
Title:
        CD




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5418_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5418
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7812
                           PA3752_tr
                           translation of PA3752
                           64
                           99.99
                           99.99
                           0
                           340.0
     

     
     
196495
                           gb|AAG07139.1|AE004794_4
                           (AE004794) hypothetical protein PA3752 [Pseudomonas aeruginosa PAO1]
                           64
                           98.43
                           99.99
                           0
                           337.0
     

     






      

          
GC ORFID: 48420How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3752Glimmer Score: 

          
Start: 3600670Stop: 3600476

          
Length: 195


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3752 translation of PA3752Homolog Bit Score 135.0

          
Other Homologs:  

          
GC ORF Sequence

           
GTGAACGAGCGACCGGTGGCTTCGCCCTGCGTGCATGTCTGCGCGCTGGACGAGCAGGACATCTGCATCGGC 
TGCCAGCGCACGGCGGCCGAGATCACCCGCTGGGGCCTGATGAGCAACGACGAGCGCCGCGAGGTGCTCGGT 
CGCTGTTTCGAGCGCGCCAAGGCGCAAGGGCTGGTCAGCGGTTCCGCCTGA