ViewGene
Locus Name:
GeneID:
Location:

GeneID:5417
TrivialName: PA14_19480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19480
PAO1 Ortholog Locus:PA3451
Sequence Length:210
Protein Length:69
Start: 1684710
Stop: 1684501
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06839.1|AE004765_12 (AE004765) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 66/68 (97%), Positives = 66/68 (97%)
Sequence:
ATGTTGGGGAAACGTTCCACCGATCCCGTCCCGGCCACCCGCTTCCGCAGCGATCGCATAAGTTCGGTGAAT
GGCCAGTACTTCTTCTCCACCCGCGAAGGGACCCTGGAAGGTCCCTACTTCACCCGTTTCGACGCGGAGCGG
GAAATCGACGCGTATATCCGCAGGATGCGCCAATCGGCGGAAATCCAGGCGCCGGGTTCCCACTGA
Translation:
MLGKRSTDPVPATRFRSDRISSVNGQYFFSTREGTLEGPYFTRFDAEREIDAYIRRMRQSAEIQAPGSH*
AnnotationID:5422GeneID:5417
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 18:06:45
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3451
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10832




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27981




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5417
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7811
                           PA3451_tr
                           translation of PA3451
                           69
                           95.65
                           95.65
                           0
                           340.0
     

     
     
196494
                           gb|AAG06839.1|AE004765_12
                           (AE004765) hypothetical protein PA3451 [Pseudomonas aeruginosa PAO1]
                           69
                           95.65
                           95.65
                           0
                           340.0
     

     






      

          
GC ORFID: 48419How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3451Glimmer Score: 

          
Start: 3269222Stop: 3269431

          
Length: 210


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3451 translation of PA3451Homolog Bit Score 135.0

          
Other Homologs:  t_PA3451 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTGGGGAAACGTTCCACCGATCCCGTCCCGGCCACCCGCTTCCGCAGCGATCGCATAAGTTCGGTGAAT 
GGCCAGTACTTCTTCTCCACCCGCGAAGGGACCCTGGAAGGTCCCTACTTCACCCGTTTCGACGCGGAGCGG 
GAAATCGACGCGTATATCCGCAGGATGCGCCAATCGGCGGAAATCCAGGCGCCGGGTTCCCACTGA