ViewGene

Locus Name:
GeneID:
Location:

GeneID:5416
TrivialName: PA14_51570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51570
PAO1 Ortholog Locus:
Sequence Length:219
Protein Length:72
Start: 4585871
Stop: 4585653
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP82955.1| (AY273870) hypothetical protein [Pseudomonas aeruginosa]
Identities = 72/72 (100%), Positives = 72/72 (100%)
Sequence:
ATGGAACGCTTGCTCGAGAGCATTTACATCAATGCCCGGCCGGCGATGGAGTTGAGGCTTAGCCTCACCAGC
TCCGGCCGCAAGAGAATGGTAAAGATTGTGGATGGGGAGGAGGTCGAGGTTCTGCCAGGTGAAGTGCAGGGC
ATCCTGGAGGCCCAAAAGAGGGATGTTGGAATCCTCGCCGACTTCTTAGCCAAGAGTCTCGTGGCGCGACGC
TAG
Translation:
MERLLESIYINARPAMELRLSLTSSGRKRMVKIVDGEEVEVLPGEVQGILEAQKRDVGILADFLAKSLVARR
*
AnnotationID:5421GeneID:5416
AnnotatorUID: danlee
Modification Date/Time: 2005-08-26 15:03:16
Gene Name:RS10
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:10830
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27978
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32077
Author/Investigator(s): He J, Baldini RL, Deziel E, Saucier M, Zhang Q, Liberati NT, Lee D, Urbach J, Goodman HM, Rahme LG.
Title: The broad host range pathogen Pseudomonas aeruginosa strain PA14 carries two pathogenicity islands harboring plant and animal virulence genes.
PubMed: 14983043
MedLine:
Source:
Proc Natl Acad Sci U S A. 2004 Feb 24;101(8):2530-5.
Reference Type:Journal
Data:
URL:
Homologs By Global Alignment
Gene ID:5416

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
196492 gb|AAP82955.1| (AY273870) hypothetical protein [Pseudomonas aeruginosa] 72 99.99 99.99 0 343.0
196493 gb|AAP84146.1| (AY273869) hypothetical protein RL019 [Pseudomonas aeruginosa] 72 95.83 97.22 0 329.0
GC ORFID: 48418How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_RS10Glimmer Score:
Start: 368036Stop: 368254
Length: 219
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_RS10 72 Homolog: No significant similarity () translation of RS10Homolog Bit Score 136.0
Other Homologs: t_RL019 (ORF: BLASTX 131.0)
GC ORF Sequence
ATGGAACGCTTGCTCGAGAGCATTTACATCAATGCCCGGCCGGCGATGGAGTTGAGGCTTAGCCTCACCAGC
TCCGGCCGCAAGAGAATGGTAAAGATTGTGGATGGGGAGGAGGTCGAGGTTCTGCCAGGTGAAGTGCAGGGC
ATCCTGGAGGCCCAAAAGAGGGATGTTGGAATCCTCGCCGACTTCTTAGCCAAGAGTCTCGTGGCGCGACGC
TAG