ViewGene
Locus Name:
GeneID:
Location:

GeneID:5415
TrivialName: PA14_18800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18800
PAO1 Ortholog Locus:PA3520
Sequence Length:195
Protein Length:64
Start: 1620687
Stop: 1620881
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06908.1|AE004772_6 (AE004772) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 64/64 (100%), Positives = 64/64 (100%)
Sequence:
ATGTTTTCTTTCCATATTCCGAACATGACCTGCGGCGGTTGTGCCAAGACTGTCACCCGTATCCTGCACGGC
GTCGATCCCCAGGCGCGCGTAGAGACCGATCCCCCTCGGCGCGAGGCCAGGGTCGAGAGCACTCTGGACAAG
CACGCATTCCTCGAGGCGTTGAGCGAGGCCGGTTATCCGGAGGGCCGTTGA
Translation:
MFSFHIPNMTCGGCAKTVTRILHGVDPQARVETDPPRREARVESTLDKHAFLEALSEAGYPEGR*
AnnotationID:5420GeneID:5415
AnnotatorUID: diggins
Modification Date/Time: 2005-04-19 15:03:46
Gene Name:
Confidence Code:3
GeneProduct:putative heavy metal binding protein
Cell Localization:()
Synonyms:PA3520
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00371,pfam00403,COG2608
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
cd00371, HMA, Heavy-metal-associated domain (HMA)
CD-Length = 63 residues,  96.8% aligned
Score = 41.0 bits (96), Expect = 3e-05
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

pfam00403, HMA, Heavy-metal-associated domain.
CD-Length = 66 residues,  80.3% aligned
Score = 36.4 bits (84), Expect = 6e-04
Identities = 15/53 (28%), Positives = 23/53 (43%)

COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]
CD-Length = 71 residues,  90.1% aligned
Score = 64.2 bits (156), Expect = 2e-12
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 3/64 (4%)







   
Genomic Context:






   
Comment:


















    ReferenceID:10828




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27976




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32046




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5415_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5415
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7810
                           PA3520_tr
                           translation of PA3520
                           64
                           99.99
                           99.99
                           0
                           342.0
     

     
     
196491
                           gb|AAG06908.1|AE004772_6
                           (AE004772) hypothetical protein PA3520 [Pseudomonas aeruginosa PAO1]
                           64
                           99.99
                           99.99
                           0
                           342.0
     

     






      

          
GC ORFID: 48417How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3520Glimmer Score: 

          
Start: 3333247Stop: 3333053

          
Length: 195


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3520 translation of PA3520Homolog Bit Score 136.0

          
Other Homologs:  t_PA3520 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTTTCTTTCCATATTCCGAACATGACCTGCGGCGGTTGTGCCAAGACTGTCACCCGTATCCTGCACGGC 
GTCGATCCCCAGGCGCGCGTAGAGACCGATCCCCCTCGGCGCGAGGCCAGGGTCGAGAGCACTCTGGACAAG 
CACGCATTCCTCGAGGCGTTGAGCGAGGCCGGTTATCCGGAGGGCCGTTGA