ViewGene
Locus Name:
GeneID:
Location:

GeneID:5413
TrivialName: PA14_14810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14810
PAO1 Ortholog Locus:PA3808
Sequence Length:201
Protein Length:66
Start: 1259146
Stop: 1259346
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07195.1|AE004799_1 (AE004799) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 66/66 (100%), Positives = 66/66 (100%)
Sequence:
ATGAGCCTGAAATGGACCGATGTGCTGGAAATCGCCATCCAGCTCGACGAAAGCAAGCCGGAGGTCGATCCG
CGATACGTCAACTTCGTCGATCTGCGGCGCTGGGTGGTGGAACTTCCAGAGTTCTCCGACGATCCTCAGCGT
AGCGGGGAGAAAGTCCTGGAGGCCATCCAGGCCGCCTGGATCGAGGAGCGGGACTAG
Translation:
MSLKWTDVLEIAIQLDESKPEVDPRYVNFVDLRRWVVELPEFSDDPQRSGEKVLEAIQAAWIEERD*
AnnotationID:5418GeneID:5413
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 11:11:38
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3808
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10824




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27972




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31748




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5413_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5413
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7808
                           PA3808_tr
                           translation of PA3808
                           66
                           99.99
                           99.99
                           0
                           344.0
     

     
     
196486
                           gb|AAG07195.1|AE004799_1
                           (AE004799) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           66
                           99.99
                           99.99
                           0
                           344.0
     

     
     
196487
                           gb|AAC44153.1|
                           (U41267) YfhJ [Pseudomonas aeruginosa]
                           66
                           99.99
                           99.99
                           0
                           344.0
     

     
     
196488
                           gb|AAN66473.1|AE016276_8
                           (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440]
                           66
                           86.36
                           89.39
                           0
                           299.0
     

     
     
196489
                           gb|AAC24476.1|
                           (AF010139) unknown [Azotobacter vinelandii]
                           68
                           69.11
                           83.82
                           2
                           263.0
     

     






      

          
GC ORFID: 48415How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3808Glimmer Score: 

          
Start: 3694792Stop: 3694592

          
Length: 201


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3808 translation of PA3808Homolog Bit Score 137.0

          
Other Homologs:  t_PA3808 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCTGAAATGGACCGATGTGCTGGAAATCGCCATCCAGCTCGACGAAAGCAAGCCGGAGGTCGATCCG 
CGATACGTCAACTTCGTCGATCTGCGGCGCTGGGTGGTGGAACTTCCAGAGTTCTCCGACGATCCTCAGCGT 
AGCGGGGAGAAAGTCCTGGAGGCCATCCAGGCCGCCTGGATCGAGGAGCGGGACTAG