ViewGene
Locus Name:
GeneID:
Location:

GeneID:5412
TrivialName: PA14_59970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59970
PAO1 Ortholog Locus:
Sequence Length:219
Protein Length:72
Start: 5341148
Stop: 5340930
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84146.1| (AY273869) hypothetical protein RL019 [Pseudomonas aeruginosa]
Identities = 72/72 (100%), Positives = 72/72 (100%)
Sequence:
ATGGAGCGCTTGCTCGAGAGCATTTACATCAATGCTCGGCCGGCAATGGAGTTGAGGCTTAGCCTCACCAGC
TCCGGCCACAAGAGAATGGTAAAGATTGTGGATGGGGAGGAGGTCGAGGTTCTGCCAGGTGAAGTGCAGGGC
ATCCTGGAGGACCAAAAGAGGGATGTTGGAATCCTCGCCGATTTCTTAGCCAAGAGTCTCTTGGCGCGACGC
TAG
Translation:
MERLLESIYINARPAMELRLSLTSSGHKRMVKIVDGEEVEVLPGEVQGILEDQKRDVGILADFLAKSLLARR
*
AnnotationID:5417GeneID:5412
AnnotatorUID: diggins
Modification Date/Time: 2006-01-23 05:05:47
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold






   
Genomic Context:






   
Comment:


















    ReferenceID:10822




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27970




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5412
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
196484
                           gb|AAP84146.1|
                           (AY273869) hypothetical protein RL019 [Pseudomonas aeruginosa]
                           72
                           99.99
                           99.99
                           0
                           348.0
     

     
     
196485
                           gb|AAP82955.1|
                           (AY273870) hypothetical protein [Pseudomonas aeruginosa]
                           72
                           95.83
                           97.22
                           0
                           329.0
     

     






      

          
GC ORFID: 48414How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL019Glimmer Score: 

          
Start: 4604827Stop: 4604609

          
Length: 219


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_RL019 72 Homolog: No significant similarity () translation of RL019Homolog Bit Score 138.0

          
Other Homologs:  t_RS10 (ORF: BLASTX 131.0)

          
GC ORF Sequence

           
ATGGAGCGCTTGCTCGAGAGCATTTACATCAATGCTCGGCCGGCAATGGAGTTGAGGCTTAGCCTCACCAGC 
TCCGGCCACAAGAGAATGGTAAAGATTGTGGATGGGGAGGAGGTCGAGGTTCTGCCAGGTGAAGTGCAGGGC 
ATCCTGGAGGACCAAAAGAGGGATGTTGGAATCCTCGCCGATTTCTTAGCCAAGAGTCTCTTGGCGCGACGC 
TAG