ViewGene
Locus Name:
GeneID:
Location:

GeneID:5411
TrivialName: PA14_62680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62680
PAO1 Ortholog Locus:PA4738
Sequence Length:198
Protein Length:65
Start: 5594636
Stop: 5594439
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08124.1|AE004887_8 (AE004887) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 65/65 (100%), Positives = 65/65 (100%)
Sequence:
ATGAATTCCGATGTGATCAAAGGTAAGTGGAAGCAACTCACCGGCAAGATCAAGGAGCGTTGGGGCGATCTG
ACCGACGACGATCTCCAGGCTGCCGACGGACATGCCGAATACCTGGTCGGCAAGCTGCAGGAACGCTATGGC
TGGTCCAAGGAAAGGGCTGAACAGGAAGTTCGCGACTTCAGCGATCGCCTGTGA
Translation:
MNSDVIKGKWKQLTGKIKERWGDLTDDDLQAADGHAEYLVGKLQERYGWSKERAEQEVRDFSDRL*
AnnotationID:5416GeneID:5411
AnnotatorUID: diggins
Modification Date/Time: 2005-03-09 07:07:56
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4738
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10820




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27968




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37617




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5411_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5411
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7807
                           PA4738_tr
                           translation of PA4738
                           65
                           99.99
                           99.99
                           0
                           348.0
     

     
     
196483
                           gb|AAG08124.1|AE004887_8
                           (AE004887) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           65
                           99.99
                           99.99
                           0
                           348.0
     

     






      

          
GC ORFID: 48413How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4738Glimmer Score: 

          
Start: 4858316Stop: 4858119

          
Length: 198


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4738 translation of PA4738Homolog Bit Score 138.0

          
Other Homologs:  t_PA4738 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATTCCGATGTGATCAAAGGTAAGTGGAAGCAACTCACCGGCAAGATCAAGGAGCGTTGGGGCGATCTG 
ACCGACGACGATCTCCAGGCTGCCGACGGACATGCCGAATACCTGGTCGGCAAGCTGCAGGAACGCTATGGC 
TGGTCCAAGGAAAGGGCTGAACAGGAAGTTCGCGACTTCAGCGATCGCCTGTGA