ViewGene

Locus Name:
GeneID:
Location:

GeneID:5410
TrivialName: PA14_12560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12560
PAO1 Ortholog Locus:PA3966
Sequence Length:210
Protein Length:69
Start: 1079316
Stop: 1079107
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07353.1|AE004814_8 (AE004814) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 69/69 (100%), Positives = 69/69 (100%)
Sequence:
ATGGATCCCGAACTGTTCGAAGAGTGGATGATGACCGGTCTGGTGACCGTGCTTATCCTGTTCATGGCTTTC
ATCGTGTGGGACCTGGCGAAGAAGTCGAAAGCCGGCAAGTTCGGAACCCTGATCCTGTTCTTCGCCCTCGGC
CTGGGCGTACTGGGCTTCATCATCAAGGGCCTGGTCATCGGCAGCCTCGAAGGCGCGGGCATGTAA
Translation:
MDPELFEEWMMTGLVTVLILFMAFIVWDLAKKSKAGKFGTLILFFALGLGVLGFIIKGLVIGSLEGAGM*
AnnotationID:5415GeneID:5410
AnnotatorUID: urbach
Modification Date/Time: 2004-05-21 18:06:46
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3966
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:10818
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27966
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5410

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7806 PA3966_tr translation of PA3966 69 99.99 99.99 0 348.0
196481 gb|AAG07353.1|AE004814_8 (AE004814) hypothetical protein PA3966 [Pseudomonas aeruginosa PAO1] 69 99.99 99.99 0 348.0
196482 gb|AAN70347.1|AE016676_7 (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440] 69 78.26 82.60 2 270.0
GC ORFID: 48412How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3966Glimmer Score:
Start: 3874622Stop: 3874831
Length: 210
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA3966 translation of PA3966Homolog Bit Score 138.0
Other Homologs: t_PA3966 (ORF: GLIMMER)
GC ORF Sequence
ATGGATCCCGAACTGTTCGAAGAGTGGATGATGACCGGTCTGGTGACCGTGCTTATCCTGTTCATGGCTTTC
ATCGTGTGGGACCTGGCGAAGAAGTCGAAAGCCGGCAAGTTCGGAACCCTGATCCTGTTCTTCGCCCTCGGC
CTGGGCGTACTGGGCTTCATCATCAAGGGCCTGGTCATCGGCAGCCTCGAAGGCGCGGGCATGTAA