ViewGene

Locus Name:
GeneID:
Location:

GeneID: 541

TrivialName: PA14_55320

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_55320

PAO1 Ortholog Locus: PA0696

Sequence Length: 1707

Protein Length: 568

Start: 4911982

Stop: 4910276

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04085.1|AE004505_6 (AE004505) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 563/568 (99%), Positives = 566/568 (99%)

Sequence:

ATGAACGCGAAAGTGAACCGACTGGCGCTGGGGATGGGCGTCATGCTCGCCGCGCTGGCCGGCCAGGCGCAG
GCCCAGCCGCCGGCGCCCTCGGAGAACGCCACGATCAACCTGATCCGCCTGCTGGTACAGCAGGGCGTGTTG
AAGAAGGAACAGGCCGATGCGCTGGTCAGGCAGGCCGAGGCCGAGGCGCTGCAGGCCCAGCAGGCGCGCCAA
GCCGTGGCGCCCGCGGCGGCTGTCGCCGCGGTCCCCGGGGAGGTCCGCGTACCCTATATCCCGCAGGTGGTG
CGCGACCAGATCCGCGACGAAGTGAAGGCCGAGGTAATGACCCAGGCCAAGGCGGAGAACTGGGCGCAGCCC
AACGCCTTCCCGGACTGGGCCTCGCGCATCAGCTTCGACGGCGACGTGCGCCTGCGCTACGAGTCGCGCTCC
TTCGGCAACGGCAACAGCAACCAGATCACCGACTTCGCCGAACTCAACGACGACGGTCCCTATGACGTCAAC
CCGAATACCAGCTCGGGCCTGCCGCCGCTGCTCAACACCCGCGAGGACCGCGACAGCCTGCTGCGCCTGCGC
GCGCGCTTCGGCCTCAAGGCGACGCTGTCGGAAAGCTGGAGCGCCGGCATCCGCATCGGCACCGGTTCGGAC
AACAACCCGGTGTCGACCACCCAGACCCTCGGCGGCGGCTTCGGCAAGAAGGACCTCTGGCTCGACCAGGGC
TACCTGACCTGGAAGCCCAGCGAGCGCCTGAGCCTGACCGGCGGGCGGATCGCCAATCCGTTCCTGTCCACC
GACCTGTTGTATTCCAACGACCTCAACTTCGACGGCGTGGCGGCGATCTTCAACCAGCCGCTGAGCCGCGAT
GTCTCGCTGTTCGGCACGGTCGGCGCGTTCCCCGTGGAGTACAGCTCGGACACCGCCTCGTCGAACGGTTTC
GACAAGGAAGACAGCGACAACAAGTGGATGTACGGCGCGCAATTGGGCGCCACCTGGAAGATCAACCCGCAG
CACAGCCTTACCGGCGCGCTGGCCTACTACCGCTTCGACGATATCGAAGGGCGGCGTTCCAGCCCCTGCCGG
CCCTGGGCCGGAGATCCGGAGTGCGACACCGACGGCAGCCGACCGACCTTCATGCAGAAGGGCAACACGGTG
TTCCTCCTGCGCGACATCGTGCCCAACCCGGCCGACCCGGCGAACACGCCGAACCCGCAGTACGTCGGCCTG
GCCTCGGAGTTCAACCTGCTCGACCTGAACCTCGGCTGGGATGCCGAGCTGCCCAACGACTTCAAGCTGCGG
GTGGCCGGCAACTACGTGCACAACCTGGGCTACGACGAGGGCGACATGCGCAAGCGCGCCGGCGGTGTGGCG
CAGATCGCCAACAACCTCGGCTCCGATGGCGACATCAAGAGCGGGGCGAACGCCTGGATGCTCCAGTTCACC
CTGGGCAACGCCCTGGACATGCGCGACGCCGGCGACTGGCAGGTCTTCGCCGCCTACAAGTACATCCAGCCG
GATGCCCTGCCGGACGGTTTCAACGATTCCACCTTCCACCTTGGCGGGACCAACGCCAAGGGCTACATCCTC
GGCGCCAGCTATGGCTTCGACAAGCGCGTCTACGGTACCGCGCGCTGGCTCAGCTCCGACGAGGTCTACGGC
GCACCGTTCTCCATCGACGTCCTGCAACTCGAGGTCAACACGCGCTTCTGA

Translation:

MNAKVNRLALGMGVMLAALAGQAQAQPPAPSENATINLIRLLVQQGVLKKEQADALVRQAEAEALQAQQARQ
AVAPAAAVAAVPGEVRVPYIPQVVRDQIRDEVKAEVMTQAKAENWAQPNAFPDWASRISFDGDVRLRYESRS
FGNGNSNQITDFAELNDDGPYDVNPNTSSGLPPLLNTREDRDSLLRLRARFGLKATLSESWSAGIRIGTGSD
NNPVSTTQTLGGGFGKKDLWLDQGYLTWKPSERLSLTGGRIANPFLSTDLLYSNDLNFDGVAAIFNQPLSRD
VSLFGTVGAFPVEYSSDTASSNGFDKEDSDNKWMYGAQLGATWKINPQHSLTGALAYYRFDDIEGRRSSPCR
PWAGDPECDTDGSRPTFMQKGNTVFLLRDIVPNPADPANTPNPQYVGLASEFNLLDLNLGWDAELPNDFKLR
VAGNYVHNLGYDEGDMRKRAGGVAQIANNLGSDGDIKSGANAWMLQFTLGNALDMRDAGDWQVFAAYKYIQP
DALPDGFNDSTFHLGGTNAKGYILGASYGFDKRVYGTARWLSSDEVYGAPFSIDVLQLEVNTRF*

AnnotationID:550 GeneID:541

AnnotatorUID: danlee

Modification Date/Time: 2004-03-11 16:04:58

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA0696

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:1085

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:18227

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:541

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

940 PA0696_tr translation of PA0696 568 99.11 99.64 0 2965.0

37777 gb|AAG04085.1|AE004505_6 (AE004505) hypothetical protein PA0696 [Pseudomonas aeruginosa PAO1] 568 99.11 99.64 0 2965.0

GC ORFID: `43543`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0696`	Glimmer Score:
Start: `41925`	Stop: `43631`
Length: `1707`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0696 translation of PA0696`	Homolog Bit Score `1146.0`
Other Homologs: `t_PA0696 (ORF: GLIMMER)`
GC ORF Sequence
ATGAACGCGAAAGTGAACCGACTGGCGCTGGGGATGGGCGTCATGCTCGCCGCGCTGGCCGGCCAGGCGCAG GCCCAGCCGCCGGCGCCCTCGGAGAACGCCACGATCAACCTGATCCGCCTGCTGGTACAGCAGGGCGTGTTG AAGAAGGAACAGGCCGATGCGCTGGTCAGGCAGGCCGAGGCCGAGGCGCTGCAGGCCCAGCAGGCGCGCCAA GCCGTGGCGCCCGCGGCGGCTGTCGCCGCGGTCCCCGGGGAGGTCCGCGTACCCTATATCCCGCAGGTGGTG CGCGACCAGATCCGCGACGAAGTGAAGGCCGAGGTAATGACCCAGGCCAAGGCGGAGAACTGGGCGCAGCCC AACGCCTTCCCGGACTGGGCCTCGCGCATCAGCTTCGACGGCGACGTGCGCCTGCGCTACGAGTCGCGCTCC TTCGGCAACGGCAACAGCAACCAGATCACCGACTTCGCCGAACTCAACGACGACGGTCCCTATGACGTCAAC CCGAATACCAGCTCGGGCCTGCCGCCGCTGCTCAACACCCGCGAGGACCGCGACAGCCTGCTGCGCCTGCGC GCGCGCTTCGGCCTCAAGGCGACGCTGTCGGAAAGCTGGAGCGCCGGCATCCGCATCGGCACCGGTTCGGAC AACAACCCGGTGTCGACCACCCAGACCCTCGGCGGCGGCTTCGGCAAGAAGGACCTCTGGCTCGACCAGGGC TACCTGACCTGGAAGCCCAGCGAGCGCCTGAGCCTGACCGGCGGGCGGATCGCCAATCCGTTCCTGTCCACC GACCTGTTGTATTCCAACGACCTCAACTTCGACGGCGTGGCGGCGATCTTCAACCAGCCGCTGAGCCGCGAT GTCTCGCTGTTCGGCACGGTCGGCGCGTTCCCCGTGGAGTACAGCTCGGACACCGCCTCGTCGAACGGTTTC GACAAGGAAGACAGCGACAACAAGTGGATGTACGGCGCGCAATTGGGCGCCACCTGGAAGATCAACCCGCAG CACAGCCTTACCGGCGCGCTGGCCTACTACCGCTTCGACGATATCGAAGGGCGGCGTTCCAGCCCCTGCCGG CCCTGGGCCGGAGATCCGGAGTGCGACACCGACGGCAGCCGACCGACCTTCATGCAGAAGGGCAACACGGTG TTCCTCCTGCGCGACATCGTGCCCAACCCGGCCGACCCGGCGAACACGCCGAACCCGCAGTACGTCGGCCTG GCCTCGGAGTTCAACCTGCTCGACCTGAACCTCGGCTGGGATGCCGAGCTGCCCAACGACTTCAAGCTGCGG GTGGCCGGCAACTACGTGCACAACCTGGGCTACGACGAGGGCGACATGCGCAAGCGCGCCGGCGGTGTGGCG CAGATCGCCAACAACCTCGGCTCCGATGGCGACATCAAGAGCGGGGCGAACGCCTGGATGCTCCAGTTCACC CTGGGCAACGCCCTGGACATGCGCGACGCCGGCGACTGGCAGGTCTTCGCCGCCTACAAGTACATCCAGCCG GATGCCCTGCCGGACGGTTTCAACGATTCCACCTTCCACCTTGGCGGGACCAACGCCAAGGGCTACATCCTC GGCGCCAGCTATGGCTTCGACAAGCGCGTCTACGGTACCGCGCGCTGGCTCAGCTCCGACGAGGTCTACGGC GCACCGTTCTCCATCGACGTCCTGCAACTCGAGGTCAACACGCGCTTCTGA