ViewGene
Locus Name:
GeneID:
Location:

GeneID:5409
TrivialName: PA14_48380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48380
PAO1 Ortholog Locus:PA1230
Sequence Length:198
Protein Length:65
Start: 4303079
Stop: 4302882
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04619.1|AE004552_9 (AE004552) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 65/65 (100%), Positives = 65/65 (100%)
Sequence:
GTGCCCTGCATGCTGAGCGAAGTCTCCGTTTCCGGCCTCTACGTGCCGCCATTGTTCCTCTACCTGTGCCTG
GCGATGCCGCTCTACCTGCTGCTGGAGCGCCTCGCCTGGCGCTGGCTGGAATGCGCCTGGCATCCCGGCCTG
CTGCGTTTCTTCCTGTCGTTCATCGTGCTGTCCGTGCTGGTGCTGAAGTTCTGA
Translation:
MPCMLSEVSVSGLYVPPLFLYLCLAMPLYLLLERLAWRWLECAWHPGLLRFFLSFIVLSVLVLKF*
AnnotationID:5414GeneID:5409
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 08:08:56
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1230
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15334




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27964




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5409
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7805
                           PA1230_tr
                           translation of PA1230
                           65
                           99.99
                           99.99
                           0
                           347.0
     

     
     
196480
                           gb|AAG04619.1|AE004552_9
                           (AE004552) hypothetical protein PA1230 [Pseudomonas aeruginosa PAO1]
                           65
                           98.46
                           99.99
                           0
                           344.0
     

     






      

          
GC ORFID: 48411How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1230Glimmer Score: 

          
Start: 650829Stop: 651026

          
Length: 198


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1230 translation of PA1230Homolog Bit Score 138.0

          
Other Homologs:  t_PA1230 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCCCTGCATGCTGAGCGAAGTCTCCGTTTCCGGCCTCTACGTGCCGCCATTGTTCCTCTACCTGTGCCTG 
GCGATGCCGCTCTACCTGCTGCTGGAGCGCCTCGCCTGGCGCTGGCTGGAATGCGCCTGGCATCCCGGCCTG 
CTGCGTTTCTTCCTGTCGTTCATCGTGCTGTCCGTGCTGGTGCTGAAGTTCTGA