ViewGene
Locus Name:
GeneID:
Location:

GeneID:5408
TrivialName: PA14_51850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51850
PAO1 Ortholog Locus:PA0960
Sequence Length:210
Protein Length:69
Start: 4605072
Stop: 4604863
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04349.1|AE004530_2 (AE004530) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 69/69 (100%), Positives = 69/69 (100%)
Sequence:
ATGGAGCTGGACGCGCGCATGGATGACCTGGAATGCCGCCAGGCTTTCCAGGATGACACTTTGCAGGCTCTC
AACGATGTGGTGGTCGAGCAGCAGCGCAGCATTGAGCGACTGCAGCTTCAGGTCGCGGCATTGATCAAGCGT
CTGGAAGACGTCCAGGGGCTGGTGGGCGAGGCGGGGGAAGACGAAGCGCCTCCTCCCCATTATTGA
Translation:
MELDARMDDLECRQAFQDDTLQALNDVVVEQQRSIERLQLQVAALIKRLEDVQGLVGEAGEDEAPPPHY*
AnnotationID:5413GeneID:5408
AnnotatorUID: danlee
Modification Date/Time: 2004-05-12 11:11:07
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0960
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2900
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2900, SlyX, Uncharacterized protein conserved in bacteria [Function unknown]
        CD-Length = 72 residues,  95.8% aligned
        Score = 70.7 bits (173), Expect = 3e-14






   
Genomic Context:






   
Comment:


















    ReferenceID:10814




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27962




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5408
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7804
                           PA0960_tr
                           translation of PA0960
                           69
                           99.99
                           99.99
                           0
                           348.0
     

     
     
196479
                           gb|AAG04349.1|AE004530_2
                           (AE004530) hypothetical protein PA0960 [Pseudomonas aeruginosa PAO1]
                           69
                           99.99
                           99.99
                           0
                           348.0
     

     






      

          
GC ORFID: 48410How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0960Glimmer Score: 

          
Start: 348835Stop: 349044

          
Length: 210


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0960 translation of PA0960Homolog Bit Score 138.0

          
Other Homologs:  t_PA0960 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAGCTGGACGCGCGCATGGATGACCTGGAATGCCGCCAGGCTTTCCAGGATGACACTTTGCAGGCTCTC 
AACGATGTGGTGGTCGAGCAGCAGCGCAGCATTGAGCGACTGCAGCTTCAGGTCGCGGCATTGATCAAGCGT 
CTGGAAGACGTCCAGGGGCTGGTGGGCGAGGCGGGGGAAGACGAAGCGCCTCCTCCCCATTATTGA