ViewGene
Locus Name:
GeneID:
Location:

GeneID:5407
TrivialName: PA14_07970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07970
PAO1 Ortholog Locus:PA0612
Sequence Length:201
Protein Length:66
Start: 687109
Stop: 687309
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04001.1|AE004497_8 (AE004497) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 66/66 (100%), Positives = 66/66 (100%)
Sequence:
ATGGCTGACCTTGCCGATCACGCCAACGAACTGGTCCTGGCTCGCCTCGACGGCCTCCTGGCGGCGCGCCCG
GCGCTGGCCATCCGCGAGTCCGCGGAAGACTGCGAGGACTGCGGCGAGCCCATTCCCCAGGCGCGCCGCCGG
GCGGCACCGGGTTGCAGTCGCTGCATCGACTGCCAGGACCGCCACGAGCGCCGTTGA
Translation:
MADLADHANELVLARLDGLLAARPALAIRESAEDCEDCGEPIPQARRRAAPGCSRCIDCQDRHERR*
AnnotationID:5412GeneID:5407
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 12:12:10
Gene Name:
Confidence Code:3
GeneProduct:putative zinc finger protein
Cell Localization:()
Synonyms:PA0612
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(24) Transcription, RNA processing and degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01258
Secondary Functional Category(ies):transcriptional regulator
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam01258, zf-dskA_traR, Prokaryotic dksA/traR C4-type zinc finger.
CD-Length = 70 residues,  92.9% aligned
Score = 42.0 bits (98), Expect = 2e-05
Identities = 26/65 (40%), Positives = 33/65 (50%)







   
Genomic Context:






   
Comment:


















    ReferenceID:10812




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27960




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33884




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5407_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5407
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7803
                           PA0612_tr
                           translation of PA0612
                           66
                           99.99
                           99.99
                           0
                           350.0
     

     
     
196476
                           gb|AAG04001.1|AE004497_8
                           (AE004497) hypothetical protein PA0612 [Pseudomonas aeruginosa PAO1]
                           66
                           99.99
                           99.99
                           0
                           350.0
     

     
     
196477
                           dbj|BAA83134.1|
                           (AB030826) C4-type zinc finger protein (TraR family)~PRF6 [Pseudomonas aeruginosa]
                           66
                           99.99
                           99.99
                           0
                           350.0
     

     
     
196478
                           dbj|BAA83148.1|
                           (AB030825) C4-type zinc finger protein (TraR family)~PRF6 [Pseudomonas aeruginosa]
                           66
                           99.99
                           99.99
                           0
                           350.0
     

     






      

          
GC ORFID: 48409How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0612Glimmer Score: 

          
Start: 6488452Stop: 6488652

          
Length: 201


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0612 translation of PA0612Homolog Bit Score 139.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGCTGACCTTGCCGATCACGCCAACGAACTGGTCCTGGCTCGCCTCGACGGCCTCCTGGCGGCGCGCCCG 
GCGCTGGCCATCCGCGAGTCCGCGGAAGACTGCGAGGACTGCGGCGAGCCCATTCCCCAGGCGCGCCGCCGG 
GCGGCACCGGGTTGCAGTCGCTGCATCGACTGCCAGGACCGCCACGAGCGCCGTTGA