ViewGene

Locus Name:
GeneID:
Location:

GeneID:5406
TrivialName: PA14_06860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06860
PAO1 Ortholog Locus:PA0526
Sequence Length:195
Protein Length:64
Start: 595870
Stop: 595676
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03915.1|AE004489_7 (AE004489) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 62/64 (96%), Positives = 62/64 (96%)
Sequence:
ATGCGCCAATGCCTGTATTGCCTCCATGAAACCGAAGGCGCGGAAAGCGCCTGCGAACAGTGCGGCATGCCA
CTGCCCAGCGCTTCCCAGCGCCAGCTCCAGGGTCGCCGGCAGCGGCGCTTCGCCTGGTTCTGCGTCGGGCTG
GCGCTGTTCTGCCTGGGCATGATGCTCTGGCTGCCGCGCGATGTTCCCTGA
Translation:
MRQCLYCLHETEGAESACEQCGMPLPSASQRQLQGRRQRRFAWFCVGLALFCLGMMLWLPRDVP*
AnnotationID:5411GeneID:5406
AnnotatorUID: diggins
Modification Date/Time: 2005-03-28 12:12:12
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0526
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:10810
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27958
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5406

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7802 PA0526_tr translation of PA0526 64 96.87 96.87 0 350.0
196474 gb|AAG03915.1|AE004489_7 (AE004489) hypothetical protein PA0526 [Pseudomonas aeruginosa PAO1] 64 96.87 96.87 0 350.0
196475 dbj|BAA08745.1| (D50019) hypothetical protein [Pseudomonas aeruginosa] 64 96.87 96.87 0 350.0
GC ORFID: 48408How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0526Glimmer Score:
Start: 6397212Stop: 6397018
Length: 195
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0526 translation of PA0526Homolog Bit Score 139.0
Other Homologs: t_PA0526 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCCAATGCCTGTATTGCCTCCATGAAACCGAAGGCGCGGAAAGCGCCTGCGAACAGTGCGGCATGCCA
CTGCCCAGCGCTTCCCAGCGCCAGCTCCAGGGTCGCCGGCAGCGGCGCTTCGCCTGGTTCTGCGTCGGGCTG
GCGCTGTTCTGCCTGGGCATGATGCTCTGGCTGCCGCGCGATGTTCCCTGA