ViewGene

Locus Name:
GeneID:
Location:

GeneID:5405
TrivialName: PA14_07200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07200
PAO1 Ortholog Locus:PA0553
Sequence Length:201
Protein Length:66
Start: 622492
Stop: 622692
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03942.1|AE004492_1 (AE004492) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 66/66 (100%), Positives = 66/66 (100%)
Sequence:
ATGCGTTCCGTAACCTTGCCACTCCTGATGTTCTGCCTGGGCCTGGCCGCCTGTAGCGGCGATGGCGGTCGA
CGCCCGAGCACCTGCGAGGTGATCAGTCCGCCGGACGTGATGGTGCCGACCGAGCAGAACCGCCAGCGGGTC
GAGCAGCAGAGTAGCGGCGATCCGACCGCCGGACAAAAGCCGGTGGAATGCCCGTAG
Translation:
MRSVTLPLLMFCLGLAACSGDGGRRPSTCEVISPPDVMVPTEQNRQRVEQQSSGDPTAGQKPVECP*
AnnotationID:5410GeneID:5405
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 07:07:56
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0553
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:10808
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27956
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5405

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7801 PA0553_tr translation of PA0553 66 99.99 99.99 0 352.0
196473 gb|AAG03942.1|AE004492_1 (AE004492) hypothetical protein PA0553 [Pseudomonas aeruginosa PAO1] 66 99.99 99.99 0 352.0
GC ORFID: 48407How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0553Glimmer Score:
Start: 6423834Stop: 6424034
Length: 201
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA0553 translation of PA0553Homolog Bit Score 140.0
Other Homologs: t_PA0553 (ORF: GLIMMER)
GC ORF Sequence
ATGCGTTCCGTAACCTTGCCACTCCTGATGTTCTGCCTGGGCCTGGCCGCCTGTAGCGGCGATGGCGGTCGA
CGCCCGAGCACCTGCGAGGTGATCAGTCCGCCGGACGTGATGGTGCCGACCGAGCAGAACCGCCAGCGGGTC
GAGCAGCAGAGTAGCGGCGATCCGACCGCCGGACAAAAGCCGGTGGAATGCCCGTAG