ViewGene

Locus Name:
GeneID:
Location:

GeneID:5404
TrivialName: PA14_06580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06580
PAO1 Ortholog Locus:PA0505
Sequence Length:231
Protein Length:76
Start: 574317
Stop: 574547
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03894.1|AE004487_8 (AE004487) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 75/76 (98%), Positives = 75/76 (98%)
Sequence:
GTGGAAATTTCCGGCAACGCTTTCGTCAGTGGCCTCAATGCGGTGCAGTCGGGTAGCGCCCGCGTCGCCCAG
GCCGGCAGCGAGATCGCCCGCAACACCGTGGAGGCCCGTTCGCCCCAGGCCGAGCAGATGGTCGAGCTGACC
CGCGGCAAGCTCGAGGCGCAGAGCGGCGCCCGGGTCATCGAGGTAGCCGACGAGACCCTCGGCACCCTGATC
GACACCCACGCCTGA
Translation:
MEISGNAFVSGLNAVQSGSARVAQAGSEIARNTVEARSPQAEQMVELTRGKLEAQSGARVIEVADETLGTLI
DTHA*
AnnotationID:5409GeneID:5404
AnnotatorUID: diggins
Modification Date/Time: 2005-03-28 04:04:10
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0505
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits at any threshold.
Genomic Context:
Comment:
ReferenceID:15332
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27954
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5404

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7800 PA0505_tr translation of PA0505 76 98.68 98.68 0 354.0
196472 gb|AAG03894.1|AE004487_8 (AE004487) hypothetical protein PA0505 [Pseudomonas aeruginosa PAO1] 76 97.36 98.68 0 351.0
GC ORFID: 48406How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0505Glimmer Score:
Start: 6375659Stop: 6375889
Length: 231
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0505 translation of PA0505Homolog Bit Score 140.0
Other Homologs: t_PA0505 (ORF: GLIMMER)
GC ORF Sequence
GTGGAAATTTCCGGCAACGCTTTCGTCAGTGGCCTCAATGCGGTGCAGTCGGGTAGCGCCCGCGTCGCCCAG
GCCGGCAGCGAGATCGCCCGCAACACCGTGGAGGCCCGTTCGCCCCAGGCCGAGCAGATGGTCGAGCTGACC
CGCGGCAAGCTCGAGGCGCAGAGCGGCGCCCGGGTCATCGAGGTAGCCGACGAGACCCTCGGCACCCTGATC
GACACCCACGCCTGA