ViewGene

Locus Name:
GeneID:
Location:

GeneID:5403
TrivialName: PA14_28080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28080
PAO1 Ortholog Locus:PA2785
Sequence Length:219
Protein Length:72
Start: 2431978
Stop: 2431760
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06173.1|AE004706_3 (AE004706) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 71/72 (98%), Positives = 72/72 (100%)
Sequence:
ATGCCCATCGAAATCAGGCTGGACGTCATGCTCGCCCTGCGCAAGGCCAGGTCCAAGGACCTGGCCCAGGCC
ATCGGTATCACCGAACAGAACCTGTCGCTGCTCAAGCAGGGCAAGGTAAAGGGCATTCGCCTCGCTACCCTG
GAGGCCATCTGCGCCTACCTGGCGTGCCAGCCGGGAAACCTGCTGGAGTACCTGCCCGGCCCGACCGAGGAG
TGA
Translation:
MPIEIRLDVMLALRKARSKDLAQAIGITEQNLSLLKQGKVKGIRLATLEAICAYLACQPGNLLEYLPGPTEE
*
AnnotationID:5408GeneID:5403
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 03:03:29
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA2785
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3655
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAK25232.1| (AE005990) transcriptional regulator, Cro/CI family [Caulobacter
          crescentus CB15]
          Length = 75

 Score = 85.9 bits (211), Expect = 5e-17
 Identities = 41/63 (65%), Positives = 50/63 (79%)

>gb|AAP09935.1| (AE017007) Transcriptional regulator, Cro/CI family [Bacillus
          cereus ATCC 14579]
          Length = 71

 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 40/71 (56%), Positives = 50/71 (70%)

>gb|AAP26821.1| (AE017033) DNA-binding protein [Bacillus anthracis str. Ames]
          Length = 71

 Score = 79.7 bits (195), Expect = 3e-15
 Identities = 39/71 (54%), Positives = 50/71 (70%)

Structural Features:
COG3655, Predicted transcriptional regulator [Transcription]
CD-Length = 73 residues,  98.6% aligned
Score = 93.2 bits (230), Expect = 6e-21
Identities = 47/72 (65%), Positives = 56/72 (77%)
Genomic Context:
Comment:
ReferenceID:10804
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27953
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36243
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5403_cdd.html
URL:
Homologs By Global Alignment
Gene ID:5403

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7799 PA2785_tr translation of PA2785 72 98.61 99.99 0 353.0
196471 gb|AAG06173.1|AE004706_3 (AE004706) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 72 98.61 99.99 0 353.0
GC ORFID: 48405How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2785Glimmer Score:
Start: 2521948Stop: 2522166
Length: 219
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2785 translation of PA2785Homolog Bit Score 140.0
Other Homologs:
GC ORF Sequence
ATGCCCATCGAAATCAGGCTGGACGTCATGCTCGCCCTGCGCAAGGCCAGGTCCAAGGACCTGGCCCAGGCC
ATCGGTATCACCGAACAGAACCTGTCGCTGCTCAAGCAGGGCAAGGTAAAGGGCATTCGCCTCGCTACCCTG
GAGGCCATCTGCGCCTACCTGGCGTGCCAGCCGGGAAACCTGCTGGAGTACCTGCCCGGCCCGACCGAGGAG
TGA