ViewGene
Locus Name:
GeneID:
Location:

GeneID:5402
TrivialName: PA14_28370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28370
PAO1 Ortholog Locus:PA2763
Sequence Length:210
Protein Length:69
Start: 2451388
Stop: 2451597
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06151.1|AE004704_5 (AE004704) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 69/69 (100%), Positives = 69/69 (100%)
Sequence:
GTGGACGATACGCTCAGGTTCGCCTCGCGCTTGTGCAAGTTCATCGTCGCCGCCAGCTTCCTGCTCGTGGCG
GTCGCCAGCCTTTGCCTGTGGTGGACGGGCCAGGCCTACGAATACGCGGCGCTGGCGTTCTTTCCGTTCGCC
GTACCCATGCTGCTGCTGATCATGGTCTGCGACCTGCTGGCAGCGCTGAATGGCAGGCGTCGCTGA
Translation:
MDDTLRFASRLCKFIVAASFLLVAVASLCLWWTGQAYEYAALAFFPFAVPMLLLIMVCDLLAALNGRRR*
AnnotationID:5407GeneID:5402
AnnotatorUID: diggins
Modification Date/Time: 2005-04-05 13:01:06
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2763
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15330




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27951




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5402
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7798
                           PA2763_tr
                           translation of PA2763
                           69
                           99.99
                           99.99
                           0
                           353.0
     

     
     
196470
                           gb|AAG06151.1|AE004704_5
                           (AE004704) hypothetical protein PA2763 [Pseudomonas aeruginosa PAO1]
                           69
                           98.55
                           99.99
                           0
                           350.0
     

     






      

          
GC ORFID: 48404How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2763Glimmer Score: 

          
Start: 2502538Stop: 2502329

          
Length: 210


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2763 translation of PA2763Homolog Bit Score 140.0

          
Other Homologs:  t_PA2763 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGACGATACGCTCAGGTTCGCCTCGCGCTTGTGCAAGTTCATCGTCGCCGCCAGCTTCCTGCTCGTGGCG 
GTCGCCAGCCTTTGCCTGTGGTGGACGGGCCAGGCCTACGAATACGCGGCGCTGGCGTTCTTTCCGTTCGCC 
GTACCCATGCTGCTGCTGATCATGGTCTGCGACCTGCTGGCAGCGCTGAATGGCAGGCGTCGCTGA