ViewGene
Locus Name:
GeneID:
Location:

GeneID:5401
TrivialName: PA14_40520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40520
PAO1 Ortholog Locus:PA1855
Sequence Length:222
Protein Length:73
Start: 3619542
Stop: 3619763
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05244.1|AE004611_9 (AE004611) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 72/73 (98%), Positives = 72/73 (98%)
Sequence:
ATGCTGTTGTCCCTGCTGTGCCTCTCCACCCTGGTGCTCGGCCTCGCCCTCAGCCTCGCCGGCAGTACCCGC
GAGGAACGCGAGCAGGCCGCCCTGCTGCCGTTCGCCGACGATCCCGAGGCCGCCCGCCGGGTCGCCCGGGAT
ACCGGCAAGATCTGCCGGCAGGTGGTCCGCCCCCTCGAGGAATCCCGCGAGGCCGCCGGCCCGCCGTTCCTC
GCCTGA
Translation:
MLLSLLCLSTLVLGLALSLAGSTREEREQAALLPFADDPEAARRVARDTGKICRQVVRPLEESREAAGPPFL
A*
AnnotationID:5406GeneID:5401
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 06:06:39
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1855
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10800




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27949




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5401
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7797
                           PA1855_tr
                           translation of PA1855
                           73
                           98.63
                           98.63
                           0
                           353.0
     

     
     
196469
                           gb|AAG05244.1|AE004611_9
                           (AE004611) hypothetical protein PA1855 [Pseudomonas aeruginosa PAO1]
                           73
                           98.63
                           98.63
                           0
                           353.0
     

     






      

          
GC ORFID: 48403How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1855Glimmer Score: 

          
Start: 1334368Stop: 1334147

          
Length: 222


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1855 translation of PA1855Homolog Bit Score 140.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCTGTTGTCCCTGCTGTGCCTCTCCACCCTGGTGCTCGGCCTCGCCCTCAGCCTCGCCGGCAGTACCCGC 
GAGGAACGCGAGCAGGCCGCCCTGCTGCCGTTCGCCGACGATCCCGAGGCCGCCCGCCGGGTCGCCCGGGAT 
ACCGGCAAGATCTGCCGGCAGGTGGTCCGCCCCCTCGAGGAATCCCGCGAGGCCGCCGGCCCGCCGTTCCTC 
GCCTGA