ViewGene
Locus Name:
GeneID:
Location:

GeneID:540
TrivialName: PA14_72740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72740
PAO1 Ortholog Locus:PA5512
Sequence Length:1767
Protein Length:588
Start: 6479448
Stop: 6477682
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08897.1|AE004963_10 (AE004963) probable two-component sensor [Pseudomonas aeruginosa PAO1]
Identities = 587/588 (99%), Positives = 587/588 (99%)
Sequence:
ATGTCCTTGTCCCGTCCGCTGCGCCTGTTCCTGCTGTTGTTGCCGCTGCTCGGCGGCCTGCTGCTGTCCATG
GACTGGGCGGGACGCCAGGCGCGGCAGCAGGCGCTACGCGCCGAGGGCGAACAGGTGCGCAAGCAGCTGGAC
CTCTACGCCGGCTCGCTGCAGACCCTGATCGAACGCTTCCGCAGCCTGCCGGCGGTACTGGCGCTGGATCCG
GATCTGCGCGCGGCGCTGGCCGGGCCGATCGACGGCGAGTTGCAGCAGCGCCTCAACCTCAAGCTGGAAAGC
ATCAACCTGGCCGCCCGCTCCTCCACCCTGGAGCTGCTCGACCGTACCGGGCTGGCCGTGGCGGCGAGCAAC
TGGAACCTGCCGACCAGCTACGTGGGCCACAACTACGGTTTCCGTCCCTATTTCCGCCAGACCATCGCCCAA
GGCTCCGGACGTTTCTATGCGGTCGGGGTGATCAGCGGGATTCCCGGTTATTTCCTGTCCCACGCGGTGCGC
GCCGAGGACGGCAGCTTCCTGGGCGCAATCGTGGTCAAGCTGGAGTTTCCCGATCTGGAACGGCAGTGGAAC
CAGACCCCCGACCTGGTCCTGGCCAGCGACGCCAAGGGTATCGTGTTCCTCGCCAACCACGCCGGTTGGCGC
TACCGCGAACTGGAACCGCTGGATACCGTGGACCGCTTCGAACTGGCGGAGACCCGGCAATACGATCGCCAG
CCCCTGACACCCCTGCGCCACCAGACCTTGCGCAGCTACGGCGAAGACAGCCGTCTGGCGCGGGTGGAAAGC
GCCGACGGCGAGAAGGACTACCTCTGGCAATCGCTGGACCTGCCCAACGACGGCTGGACCCTGCACTTGCTG
CGCGACACCGCGAGCATCCAGGACGACGTCGCCACCGCGCGCCTGGCCGCCGCCGGCACCTGGCTGGCGCTG
GTCTTCCTCGGCTTGTTCCTGCACCAGCGCTGGCGTATCGCCCGCCTGCGGCAACGTAGCCGGGAGGAGCTG
GAGCGCCTGGTCGAGCAGCGCACCGCCGACCTGCGTACCGCGCAGGACGGCCTGGTGCAGGCGGCCAAGCTG
GCCGCCCTGGGGCAGATGTCGGCGGCCCTGGCCCATGAGATCAACCAGCCGCTCACCGCCCAGCGCATGCAA
CTGGCCAGCCTGCGCCTGCTGCTCGACGCCGGACGCCACGACGAGGCGCGCCAGGCGTTGCCGCGCATCGAC
CAGATGCTCGAACGCATGGCCGCGCTCACCGGCCACCTGAAGACCTTCGCGCGCAAGAGCGCCGGCGGCCTG
CGCGAGCGTATCGAGTTGGGTCACGTGGTCGAACAGGCGCAGCAGTTGTTGCTGCCGCGAATCCGCGCCGAA
CGGGTGGAGATCGAGCAGGCGCTGCTCTGGCCGGCCTGGGTGATGGGTGACGCGATCCGCCTGGAACAGGTG
CTGGTCAACCTGCTGCGCAACGCCCTGGATGCCGTTGCCGGCCAGGAGCGGCCATGGATCCGCCTGGCCCTG
CAACGGCTTGGTGGCGACTGGGTGCTGAGCGTCGCCGACAACGGCGGCGGGATTCCCGCCGAGCACCTGGGC
AGCGTCTTCGATCCGTTCTTCACCACCAAGCCGGTGGGAGAGGGACTCGGCCTCGGCCTGGCGGTATCCTAT
GGGATCGTCCACGAACTCGGCGGCCGCCTGCAGGTCGCCAATGCCGAAGCGGGAGCGGTGTTCAGCCTGATC
CTGCCGGCGGCCCCCGATGACACGAGCGTAACGACATGA
Translation:
MSLSRPLRLFLLLLPLLGGLLLSMDWAGRQARQQALRAEGEQVRKQLDLYAGSLQTLIERFRSLPAVLALDP
DLRAALAGPIDGELQQRLNLKLESINLAARSSTLELLDRTGLAVAASNWNLPTSYVGHNYGFRPYFRQTIAQ
GSGRFYAVGVISGIPGYFLSHAVRAEDGSFLGAIVVKLEFPDLERQWNQTPDLVLASDAKGIVFLANHAGWR
YRELEPLDTVDRFELAETRQYDRQPLTPLRHQTLRSYGEDSRLARVESADGEKDYLWQSLDLPNDGWTLHLL
RDTASIQDDVATARLAAAGTWLALVFLGLFLHQRWRIARLRQRSREELERLVEQRTADLRTAQDGLVQAAKL
AALGQMSAALAHEINQPLTAQRMQLASLRLLLDAGRHDEARQALPRIDQMLERMAALTGHLKTFARKSAGGL
RERIELGHVVEQAQQLLLPRIRAERVEIEQALLWPAWVMGDAIRLEQVLVNLLRNALDAVAGQERPWIRLAL
QRLGGDWVLSVADNGGGIPAEHLGSVFDPFFTTKPVGEGLGLGLAVSYGIVHELGGRLQVANAEAGAVFSLI
LPAAPDDTSVTT*
AnnotationID:549GeneID:540
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 09:09:02
Gene Name:
Confidence Code:3
GeneProduct:putative sensor histidine kinase
Cell Localization:()
Synonyms:dctB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:putative C4-dicarboxylate transport sensor protein
Functional Category Confidence Code:5
COGs:COG4191
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57742.1| (AE016871) sensor histidine kinase [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 585

 Score =  708 bits (1828), Expect = 0.0
 Identities = 370/573 (64%), Positives = 441/573 (76%), Gaps = 4/573 (0%)

>gb|AAN67025.1|AE016331_2 (AE016779) C4-dicarboxylate transport sensor protein [Pseudomonas
           putida KT2440]
          Length = 585

 Score =  704 bits (1817), Expect = 0.0
 Identities = 366/574 (63%), Positives = 436/574 (75%), Gaps = 1/574 (0%)

>gb|AAM42618.1| (AE012453) sensor histidine kinase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 881

 Score =  338 bits (867), Expect = 6e-92
 Identities = 182/369 (49%), Positives = 237/369 (64%), Gaps = 1/369 (0%)








 
Structural Features:
COG4191, COG4191, Signal transduction histidine kinase regulating 
C4-dicarboxylate transport system 
[Signal transduction mechanisms]
CD-Length = 603 residues,  99.8% aligned
Score =  592 bits (1528), Expect = 4e-170
Identities = 312/606 (51%), Positives = 380/606 (62%), Gaps = 33/606 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1083




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18225




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33282




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:540_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:540
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
938
                           PA5512_tr
                           translation of PA5512
                           588
                           99.82
                           99.82
                           0
                           2970.0
     

     
     
37770
                           gb|AAG08897.1|AE004963_10
                           (AE004963) probable two-component sensor [Pseudomonas aeruginosa PAO1]
                           588
                           99.82
                           99.82
                           0
                           2970.0
     

     
     
37771
                           gb|AAO57742.1|
                           (AE016871) sensor histidine kinase [Pseudomonas syringae pv. tomato str. DC3000]
                           591
                           63.28
                           75.63
                           9
                           1828.0
     

     
     
37772
                           gb|AAN67025.1|AE016331_2
                           (AE016779) C4-dicarboxylate transport sensor protein [Pseudomonas putida KT2440]
                           592
                           62.83
                           74.83
                           11
                           1811.0
     

     
     
37773
                           gb|AAM42618.1|
                           (AE012453) sensor histidine kinase [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           898
                           27.72
                           38.08
                           327
                           929.0
     

     






      

          
GC ORFID: 43542How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5512Glimmer Score: 

          
Start: 5743137Stop: 5741371

          
Length: 1767


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5512 translation of PA5512Homolog Bit Score 1148.0

          
Other Homologs:  t_PA5512 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCTTGTCCCGTCCGCTGCGCCTGTTCCTGCTGTTGTTGCCGCTGCTCGGCGGCCTGCTGCTGTCCATG 
GACTGGGCGGGACGCCAGGCGCGGCAGCAGGCGCTACGCGCCGAGGGCGAACAGGTGCGCAAGCAGCTGGAC 
CTCTACGCCGGCTCGCTGCAGACCCTGATCGAACGCTTCCGCAGCCTGCCGGCGGTACTGGCGCTGGATCCG 
GATCTGCGCGCGGCGCTGGCCGGGCCGATCGACGGCGAGTTGCAGCAGCGCCTCAACCTCAAGCTGGAAAGC 
ATCAACCTGGCCGCCCGCTCCTCCACCCTGGAGCTGCTCGACCGTACCGGGCTGGCCGTGGCGGCGAGCAAC 
TGGAACCTGCCGACCAGCTACGTGGGCCACAACTACGGTTTCCGTCCCTATTTCCGCCAGACCATCGCCCAA 
GGCTCCGGACGTTTCTATGCGGTCGGGGTGATCAGCGGGATTCCCGGTTATTTCCTGTCCCACGCGGTGCGC 
GCCGAGGACGGCAGCTTCCTGGGCGCAATCGTGGTCAAGCTGGAGTTTCCCGATCTGGAACGGCAGTGGAAC 
CAGACCCCCGACCTGGTCCTGGCCAGCGACGCCAAGGGTATCGTGTTCCTCGCCAACCACGCCGGTTGGCGC 
TACCGCGAACTGGAACCGCTGGATACCGTGGACCGCTTCGAACTGGCGGAGACCCGGCAATACGATCGCCAG 
CCCCTGACACCCCTGCGCCACCAGACCTTGCGCAGCTACGGCGAAGACAGCCGTCTGGCGCGGGTGGAAAGC 
GCCGACGGCGAGAAGGACTACCTCTGGCAATCGCTGGACCTGCCCAACGACGGCTGGACCCTGCACTTGCTG 
CGCGACACCGCGAGCATCCAGGACGACGTCGCCACCGCGCGCCTGGCCGCCGCCGGCACCTGGCTGGCGCTG 
GTCTTCCTCGGCTTGTTCCTGCACCAGCGCTGGCGTATCGCCCGCCTGCGGCAACGTAGCCGGGAGGAGCTG 
GAGCGCCTGGTCGAGCAGCGCACCGCCGACCTGCGTACCGCGCAGGACGGCCTGGTGCAGGCGGCCAAGCTG 
GCCGCCCTGGGGCAGATGTCGGCGGCCCTGGCCCATGAGATCAACCAGCCGCTCACCGCCCAGCGCATGCAA 
CTGGCCAGCCTGCGCCTGCTGCTCGACGCCGGACGCCACGACGAGGCGCGCCAGGCGTTGCCGCGCATCGAC 
CAGATGCTCGAACGCATGGCCGCGCTCACCGGCCACCTGAAGACCTTCGCGCGCAAGAGCGCCGGCGGCCTG 
CGCGAGCGTATCGAGTTGGGTCACGTGGTCGAACAGGCGCAGCAGTTGTTGCTGCCGCGAATCCGCGCCGAA 
CGGGTGGAGATCGAGCAGGCGCTGCTCTGGCCGGCCTGGGTGATGGGTGACGCGATCCGCCTGGAACAGGTG 
CTGGTCAACCTGCTGCGCAACGCCCTGGATGCCGTTGCCGGCCAGGAGCGGCCATGGATCCGCCTGGCCCTG 
CAACGGCTTGGTGGCGACTGGGTGCTGAGCGTCGCCGACAACGGCGGCGGGATTCCCGCCGAGCACCTGGGC 
AGCGTCTTCGATCCGTTCTTCACCACCAAGCCGGTGGGAGAGGGACTCGGCCTCGGCCTGGCGGTATCCTAT 
GGGATCGTCCACGAACTCGGCGGCCGCCTGCAGGTCGCCAATGCCGAAGCGGGAGCGGTGTTCAGCCTGATC 
CTGCCGGCGGCCCCCGATGACACGAGCGTAACGACATGA