ViewGene
Locus Name:
GeneID:
Location:

GeneID:54
TrivialName: PA14_54170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54170
PAO1 Ortholog Locus:PA0782
Sequence Length:3183
Protein Length:1060
Start: 4806166
Stop: 4802984
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04171.1|AE004513_3 (AE004513) proline dehydrogenase PutA [Pseudomonas aeruginosa PAO1]
Identities = 1058/1060 (99%), Positives = 1060/1060 (100%)
Sequence:
ATGTTCAAAGCCAGTCACGTCTTGCAGGGCGAGGACCAGACCCGGTCCGCAGCCGAATTCTTCCCTGTCATC
AGCGCCAACTACGCGGTCGACGAGGAAGCCTACCTGGGCGAACTGCTGCAGCTCGCCGACCCCGGTCCCGAC
GGCATCGAGGCTATCCGCCGCAACGCCCGCGCACTGATCGAAACCGTGCGCAGCCGGGACAACGCCGTCGAT
ACCCTCGACGCACTCCTGCGCCAATACAGCCTGGACACCCAGGAAGGCCTGATGCTGATGTGTCTGGCCGAG
GCGCTGTTGCGTGTGCCTGACGCGGCGACCGCCGACGCGCTGATCCGCGACAAGCTGTCCGCCGCCGACTGG
CAGCGCCATCTCGGCCAGAGCGACAACGTTCTGGTCAATTTCGCCGCCTGGGGCCTGGTGATGACCGGCAAG
GTGGTGAACATCGACGAACGCACCGACGGCCGCGCCCCGAGCGTCATCAGCCGGCTGGTGCAGCGCTCTGGC
GAACCGGTGATCCGCGCCGCGATGAATCAGGCGATGAAGCTGATGGGCAAGCAGTTCGTGCTTGGCCGGACC
ATCTCCGAAGCGCTGAAGAACGGTCGTCCATGCCGCGAGCAGGGCTACACCTATTCCTTCGACATGCTCGGC
GAGGCCGCGCTGACCGCCGCCGACGCCGAGAAATACATGGCCGACTACCGCCAGGCCATCGACACTGTCGGC
GCCGAGCCGCAGGTCGGTCCGGGGCCGCGGCCGTCGATCTCGATCAAGCTCTCGGCGCTGCATCCGCGCTAC
GAAGTGGCGCAGCGCGAGCGGGTGCTCAGCGAGCTGTTCGCCAACGTCCTGGAACTGGCGGTGCGCGCGCGC
AAGCTGAACGTCGGCATCACCATCGACGCCGAGGAAGCCGATCGCCTGGAGCTGTCCCTCGAACTCTACGAG
AAGCTGATGCGCGACCCGGCCATCGCCGGCTGGGGCGAGTTCGGCCTGGTCATCCAGGCCTACTCCAAGCGC
TGCCTGCCGGTGCTGGTATGGCTGACCCTGCTCGGCCGCGAGCTTGGCGCACGCATCCCGCTGCGCCTGGTG
AAGGGTGCCTACTGGGACAGCGAGATCAAGCAGTGCCAGGTGCAGGGCGCCGATGGCTACCCCGTCTACACC
CGCAAGGAAGGCACCGACACTTCCTACCTGGCCTGCGCCCGCTACCTGCTCAGCGAGCACACCCGCGGGGTG
ATCTACCCGCAGTTCGCCAGCCACAACGCCCACACCGTGACCGCCATCCTCGCCCTGGCCGACGAAGCCAGG
GCCGCCGGCGGCGAGGAGCGCGACTTCGAGTTCCAGCGCCTGCACGGCATGGGCGACGCGCTGTACGACACG
GTGATCGAGAAGTACCGCCGCAACGTGCGCATCTACGCCCCGGTCGGCGCGCACAAGGACCTGCTGCCGTAC
CTGGTCCGCCGCCTGCTGGAGAACGGCGCCAACTCTTCCTTCGTGCACAAGCTGGTGGACCCGCGCGTGCCG
GTGGAGACGCTGATCCAGCACCCGGTTACCCAACTGCGCCAGTTCAAGACGCTGGCCAACGACCGTATCCCT
CTGCCCCAGGCGATCTTCGGCGCCGGGCGGAAAAACTCCCAGGGCATCAACATGAACATCCAGAACCAGTGG
AACGAGCTGGAGCTCGCCTACAAGCCGCACCTGACCCGCCAGTGGCAAGCCGCGCCGATCGTCAACGGCGAG
AAACTTTCCGGCCCGGCCCACGAAGTGCGTTGCCCGTACGACCTGGAGAGGCTGGTCGGCAGCGTCCAGTAC
GCGTCCGCCGAGCAGGCCGGCAAGGCCCTCGACGTGTTGCAGGCGGCCTGGCCGCGCTGGAGCGCCACCCCG
GTGGACGAGCGCGCCGGCATCCTCGAACGTCTCGCCGACCTGCTGGAAGCCCAGCGCGGCGAGCTGATGGCG
CTGTGCACCCTGGAAGCCGGCAAGTCGTTGCAGGACGGTATCGACGAGATCCGCGAGGCGGTCGACTTCTGC
CGCTACTACGCCCAGCAGGCCCGCCAGCGCCTGGTCCGCGAGGAACTGCGCGGCCCGACCGGCGAGCGCAAC
GAGCTGTTCTACGAAGGCCGCGGCATCTTCGCCTGCGTCAGCCCGTGGAACTTCCCGCTGGCGATCTTCCTC
GGCCAGATCAGCGCCGCGCTGGTGGCCGGCAACACCGTGCTGGCCAAGCCGGCCGAGCAGACCAGCCTGATC
GCCGCGCGCACCGTCGAACTGATGTTCGAAGCCGGCCTGCCGAGGGACGTTATCGCCCTGCTGCCGGGCGAC
GGCGCCACCCTCGGCGGCGTGTTCTGCCGTGACGCGCGGGTCGCCGGGGTGGCCTTCACCGGCTCCACCGAC
ACCGCCCGCATCATCAACCGCCAACTGGCCGAGAAGCCCGGCGCCATCGCCACCCTGATCGCCGAGACCGGC
GGGCAGAACGCGATGATCGTCGATTCCACCGCTTTGCCGGAACAGGTGATCAAGGATGCGGTACAATCCGCG
TTCACCAGCGCCGGCCAGCGCTGCTCCGCGCTGCGCGTGATGTACGTGCAGCAGGACATCGCCGAGCGGGTG
ATCGAGTTGCTCAAGGGCGCCATGGCCGAGCTGAAGGTCGGCCCGACCGACGTGCGCGTCAGCGACGTCGGC
CCGGTGATCGACGCCGAGGCCAAGGCCGGCCTGGAGCAGCACATCGCCGCGCTGAAGGCCGCCGGCAAGCTG
ATCGCCGAGACCAAGGTGCCGGGCAACCTGAACGGTCACTTCGTCGCTCCCGTCGCGTTCGAGATCAGCGGC
ATCGACGAGCTGAAGAAAGAGAACTTCGGCCCGGTGCTGCACGTGGTGCGTTATGCCGCGCAGGACCTGGAA
AAGGTCGTGCAGGCGATCAACGCCACCGGTTTCGGCCTGACCATGGGGGTCCATAGCCGCAACGAGGAAACC
GCCCGTCGCATCGAAGAGCTGGCGCGGGTCGGCAACCTCTACATCAACCGCAACCAGATCGGCGCGGTGGTG
GGCGTGCAACCGTTCGGCGGCCACGGGCTGTCCGGCACCGGTCCCAAGGCCGGCGGGCCGAACTACCTGCTG
CGTTTCGTCAGCGAGCGCACCACGTCGGTGAACACCACCGCGGTGGGCGGCAACGCGTCGCTGCTGTCGCTG
GCCGACGCCGAGTGA
Translation:
MFKASHVLQGEDQTRSAAEFFPVISANYAVDEEAYLGELLQLADPGPDGIEAIRRNARALIETVRSRDNAVD
TLDALLRQYSLDTQEGLMLMCLAEALLRVPDAATADALIRDKLSAADWQRHLGQSDNVLVNFAAWGLVMTGK
VVNIDERTDGRAPSVISRLVQRSGEPVIRAAMNQAMKLMGKQFVLGRTISEALKNGRPCREQGYTYSFDMLG
EAALTAADAEKYMADYRQAIDTVGAEPQVGPGPRPSISIKLSALHPRYEVAQRERVLSELFANVLELAVRAR
KLNVGITIDAEEADRLELSLELYEKLMRDPAIAGWGEFGLVIQAYSKRCLPVLVWLTLLGRELGARIPLRLV
KGAYWDSEIKQCQVQGADGYPVYTRKEGTDTSYLACARYLLSEHTRGVIYPQFASHNAHTVTAILALADEAR
AAGGEERDFEFQRLHGMGDALYDTVIEKYRRNVRIYAPVGAHKDLLPYLVRRLLENGANSSFVHKLVDPRVP
VETLIQHPVTQLRQFKTLANDRIPLPQAIFGAGRKNSQGINMNIQNQWNELELAYKPHLTRQWQAAPIVNGE
KLSGPAHEVRCPYDLERLVGSVQYASAEQAGKALDVLQAAWPRWSATPVDERAGILERLADLLEAQRGELMA
LCTLEAGKSLQDGIDEIREAVDFCRYYAQQARQRLVREELRGPTGERNELFYEGRGIFACVSPWNFPLAIFL
GQISAALVAGNTVLAKPAEQTSLIAARTVELMFEAGLPRDVIALLPGDGATLGGVFCRDARVAGVAFTGSTD
TARIINRQLAEKPGAIATLIAETGGQNAMIVDSTALPEQVIKDAVQSAFTSAGQRCSALRVMYVQQDIAERV
IELLKGAMAELKVGPTDVRVSDVGPVIDAEAKAGLEQHIAALKAAGKLIAETKVPGNLNGHFVAPVAFEISG
IDELKKENFGPVLHVVRYAAQDLEKVVQAINATGFGLTMGVHSRNEETARRIEELARVGNLYINRNQIGAVV
GVQPFGGHGLSGTGPKAGGPNYLLRFVSERTTSVNTTAVGGNASLLSLADAE*
AnnotationID:64GeneID:54
AnnotatorUID: danlee
Modification Date/Time: 2004-04-15 15:03:12
Gene Name:putA
Confidence Code:1
GeneProduct:proline dehydrogenase PutA
Cell Localization:()
Synonyms:PA0782, pruA, pruB 
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4230, COG0506, COG1012
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Arginine and proline metabolism; Glutamate metabolism
Homology:






 
Structural Features:
COG4230, Delta 1-pyrroline-5-carboxylate dehydrogenase. Score: 870, 0.0
COG0506, PutA, Proline dehydrogenase.  Score: 360, 1e-99
COG1012, PutA, NAD-dependent aldehyde dehydrogenases.  Score: 347, 1e-95






   
Genomic Context:
Part of the putAP operon; has no autorepressor function. Adjacent to PutP (proline permease).






   
Comment:


















    ReferenceID:111




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17253




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:54
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
102
                           PA0782_tr
                           translation of PA0782
                           1060
                           99.81
                           99.99
                           0
                           5373.0
     

     
     
12191
                           gb|AAG04171.1|AE004513_3
                           (AE004513) proline dehydrogenase PutA [Pseudomonas aeruginosa PAO1]
                           1060
                           99.81
                           99.99
                           0
                           5373.0
     

     
     
12192
                           gb|AAN56755.1|AE015811_3
                           (AE015811) proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase, putative [Shewanella oneidensis MR-1]
                           1068
                           60.39
                           74.81
                           17
                           3285.0
     

     
     
12193
                           dbj|BAC97670.1|
                           (AP005351) proline dehydrogenase [Vibrio vulnificus YJ016]
                           1068
                           58.23
                           71.53
                           33
                           3096.0
     

     
     
12194
                           gb|AAL58393.1|AF454004_1
                           (AF454004) proline dehydrogenase [Vibrio vulnificus]
                           1068
                           58.14
                           71.44
                           33
                           3089.0
     

     






      

          
GC ORFID: 43056How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0782Glimmer Score: 

          
Start: 147741Stop: 150923

          
Length: 3183


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0782 translation of PA0782Homolog Bit Score 2074.0

          
Other Homologs:  t_PA0782 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCAAAGCCAGTCACGTCTTGCAGGGCGAGGACCAGACCCGGTCCGCAGCCGAATTCTTCCCTGTCATC 
AGCGCCAACTACGCGGTCGACGAGGAAGCCTACCTGGGCGAACTGCTGCAGCTCGCCGACCCCGGTCCCGAC 
GGCATCGAGGCTATCCGCCGCAACGCCCGCGCACTGATCGAAACCGTGCGCAGCCGGGACAACGCCGTCGAT 
ACCCTCGACGCACTCCTGCGCCAATACAGCCTGGACACCCAGGAAGGCCTGATGCTGATGTGTCTGGCCGAG 
GCGCTGTTGCGTGTGCCTGACGCGGCGACCGCCGACGCGCTGATCCGCGACAAGCTGTCCGCCGCCGACTGG 
CAGCGCCATCTCGGCCAGAGCGACAACGTTCTGGTCAATTTCGCCGCCTGGGGCCTGGTGATGACCGGCAAG 
GTGGTGAACATCGACGAACGCACCGACGGCCGCGCCCCGAGCGTCATCAGCCGGCTGGTGCAGCGCTCTGGC 
GAACCGGTGATCCGCGCCGCGATGAATCAGGCGATGAAGCTGATGGGCAAGCAGTTCGTGCTTGGCCGGACC 
ATCTCCGAAGCGCTGAAGAACGGTCGTCCATGCCGCGAGCAGGGCTACACCTATTCCTTCGACATGCTCGGC 
GAGGCCGCGCTGACCGCCGCCGACGCCGAGAAATACATGGCCGACTACCGCCAGGCCATCGACACTGTCGGC 
GCCGAGCCGCAGGTCGGTCCGGGGCCGCGGCCGTCGATCTCGATCAAGCTCTCGGCGCTGCATCCGCGCTAC 
GAAGTGGCGCAGCGCGAGCGGGTGCTCAGCGAGCTGTTCGCCAACGTCCTGGAACTGGCGGTGCGCGCGCGC 
AAGCTGAACGTCGGCATCACCATCGACGCCGAGGAAGCCGATCGCCTGGAGCTGTCCCTCGAACTCTACGAG 
AAGCTGATGCGCGACCCGGCCATCGCCGGCTGGGGCGAGTTCGGCCTGGTCATCCAGGCCTACTCCAAGCGC 
TGCCTGCCGGTGCTGGTATGGCTGACCCTGCTCGGCCGCGAGCTTGGCGCACGCATCCCGCTGCGCCTGGTG 
AAGGGTGCCTACTGGGACAGCGAGATCAAGCAGTGCCAGGTGCAGGGCGCCGATGGCTACCCCGTCTACACC 
CGCAAGGAAGGCACCGACACTTCCTACCTGGCCTGCGCCCGCTACCTGCTCAGCGAGCACACCCGCGGGGTG 
ATCTACCCGCAGTTCGCCAGCCACAACGCCCACACCGTGACCGCCATCCTCGCCCTGGCCGACGAAGCCAGG 
GCCGCCGGCGGCGAGGAGCGCGACTTCGAGTTCCAGCGCCTGCACGGCATGGGCGACGCGCTGTACGACACG 
GTGATCGAGAAGTACCGCCGCAACGTGCGCATCTACGCCCCGGTCGGCGCGCACAAGGACCTGCTGCCGTAC 
CTGGTCCGCCGCCTGCTGGAGAACGGCGCCAACTCTTCCTTCGTGCACAAGCTGGTGGACCCGCGCGTGCCG 
GTGGAGACGCTGATCCAGCACCCGGTTACCCAACTGCGCCAGTTCAAGACGCTGGCCAACGACCGTATCCCT 
CTGCCCCAGGCGATCTTCGGCGCCGGGCGGAAAAACTCCCAGGGCATCAACATGAACATCCAGAACCAGTGG 
AACGAGCTGGAGCTCGCCTACAAGCCGCACCTGACCCGCCAGTGGCAAGCCGCGCCGATCGTCAACGGCGAG 
AAACTTTCCGGCCCGGCCCACGAAGTGCGTTGCCCGTACGACCTGGAGAGGCTGGTCGGCAGCGTCCAGTAC 
GCGTCCGCCGAGCAGGCCGGCAAGGCCCTCGACGTGTTGCAGGCGGCCTGGCCGCGCTGGAGCGCCACCCCG 
GTGGACGAGCGCGCCGGCATCCTCGAACGTCTCGCCGACCTGCTGGAAGCCCAGCGCGGCGAGCTGATGGCG 
CTGTGCACCCTGGAAGCCGGCAAGTCGTTGCAGGACGGTATCGACGAGATCCGCGAGGCGGTCGACTTCTGC 
CGCTACTACGCCCAGCAGGCCCGCCAGCGCCTGGTCCGCGAGGAACTGCGCGGCCCGACCGGCGAGCGCAAC 
GAGCTGTTCTACGAAGGCCGCGGCATCTTCGCCTGCGTCAGCCCGTGGAACTTCCCGCTGGCGATCTTCCTC 
GGCCAGATCAGCGCCGCGCTGGTGGCCGGCAACACCGTGCTGGCCAAGCCGGCCGAGCAGACCAGCCTGATC 
GCCGCGCGCACCGTCGAACTGATGTTCGAAGCCGGCCTGCCGAGGGACGTTATCGCCCTGCTGCCGGGCGAC 
GGCGCCACCCTCGGCGGCGTGTTCTGCCGTGACGCGCGGGTCGCCGGGGTGGCCTTCACCGGCTCCACCGAC 
ACCGCCCGCATCATCAACCGCCAACTGGCCGAGAAGCCCGGCGCCATCGCCACCCTGATCGCCGAGACCGGC 
GGGCAGAACGCGATGATCGTCGATTCCACCGCTTTGCCGGAACAGGTGATCAAGGATGCGGTACAATCCGCG 
TTCACCAGCGCCGGCCAGCGCTGCTCCGCGCTGCGCGTGATGTACGTGCAGCAGGACATCGCCGAGCGGGTG 
ATCGAGTTGCTCAAGGGCGCCATGGCCGAGCTGAAGGTCGGCCCGACCGACGTGCGCGTCAGCGACGTCGGC 
CCGGTGATCGACGCCGAGGCCAAGGCCGGCCTGGAGCAGCACATCGCCGCGCTGAAGGCCGCCGGCAAGCTG 
ATCGCCGAGACCAAGGTGCCGGGCAACCTGAACGGTCACTTCGTCGCTCCCGTCGCGTTCGAGATCAGCGGC 
ATCGACGAGCTGAAGAAAGAGAACTTCGGCCCGGTGCTGCACGTGGTGCGTTATGCCGCGCAGGACCTGGAA 
AAGGTCGTGCAGGCGATCAACGCCACCGGTTTCGGCCTGACCATGGGGGTCCATAGCCGCAACGAGGAAACC 
GCCCGTCGCATCGAAGAGCTGGCGCGGGTCGGCAACCTCTACATCAACCGCAACCAGATCGGCGCGGTGGTG 
GGCGTGCAACCGTTCGGCGGCCACGGGCTGTCCGGCACCGGTCCCAAGGCCGGCGGGCCGAACTACCTGCTG 
CGTTTCGTCAGCGAGCGCACCACGTCGGTGAACACCACCGCGGTGGGCGGCAACGCGTCGCTGCTGTCGCTG 
GCCGACGCCGAGTGA