ViewGene

Locus Name:
GeneID:
Location:

GeneID:5398
TrivialName: PA14_72900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72900
PAO1 Ortholog Locus:PA5526
Sequence Length:213
Protein Length:70
Start: 6492303
Stop: 6492091
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08911.1|AE004965_3 (AE004965) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 70/70 (100%), Positives = 70/70 (100%)
Sequence:
ATGAAGTTCAAAGCTCTGTTCGCTGCATTGCTGCTGACCAGCCTGGCGGGTTGCGCCAACCAGGCGGTGGTC
ACTTTGCAAGATGGCAGTGAGGTCCTGGTCAAGGATCAGTCGGATTACGACAAATACAATGACTACTACGAG
TTCGAACAGCTGAATGGCGACACCATCCTGATCAAGAAGGACAATGTGCGCACCATTCGCCCGCAGTAG
Translation:
MKFKALFAALLLTSLAGCANQAVVTLQDGSEVLVKDQSDYDKYNDYYEFEQLNGDTILIKKDNVRTIRPQ*
AnnotationID:5403GeneID:5398
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 10:10:39
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:PA5526
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO55861.1| (AE016864) lipoprotein, putative [Pseudomonas syringae pv. tomato
          str. DC3000]
          Length = 74

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 30/64 (46%), Positives = 41/64 (64%)

>emb|CAE32425.1| (BX640442) lipoprotein [Bordetella bronchiseptica]
          Length = 73

 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 24/61 (39%), Positives = 41/61 (67%), Gaps = 1/61 (1%)

Structural Features:
Genomic Context:
Comment:
ReferenceID:10794
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27943
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33245
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5398_cdd.html
URL:
Homologs By Global Alignment
Gene ID:5398

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7794 PA5526_tr translation of PA5526 70 99.99 99.99 0 355.0
196426 gb|AAG08911.1|AE004965_3 (AE004965) hypothetical protein PA5526 [Pseudomonas aeruginosa PAO1] 70 99.99 99.99 0 355.0
GC ORFID: 48400How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5526Glimmer Score:
Start: 5755992Stop: 5755780
Length: 213
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA5526 translation of PA5526Homolog Bit Score 141.0
Other Homologs: t_PA5526 (ORF: GLIMMER)
GC ORF Sequence
ATGAAGTTCAAAGCTCTGTTCGCTGCATTGCTGCTGACCAGCCTGGCGGGTTGCGCCAACCAGGCGGTGGTC
ACTTTGCAAGATGGCAGTGAGGTCCTGGTCAAGGATCAGTCGGATTACGACAAATACAATGACTACTACGAG
TTCGAACAGCTGAATGGCGACACCATCCTGATCAAGAAGGACAATGTGCGCACCATTCGCCCGCAGTAG