ViewGene
Locus Name:
GeneID:
Location:

GeneID:5397
TrivialName: PA14_19600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19600
PAO1 Ortholog Locus:
Sequence Length:339
Protein Length:112
Start: 1693850
Stop: 1693512
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAL84249.1|AF458048_2 (AF458048) type III effector HopPmaJ [Pseudomonas syringae pv. maculicola]
Identities = 73/109 (66%), Positives = 81/109 (74%)
Sequence:
ATGACCCTGACCGACTTCCGCGCGCGTCTGCGCAGCGAACACCACCTGTTCACCGACACCCTGGCGTTCATC
GCCGAGCACTACAGCTACACGCCGAGCGCCTTCGACAACGGCAGCGTGAGCAACCCGGCCGGGCAGAACGAA
GGTTCCTGCAAGACCCTGGGCTTCGCCATCCTCGAAGGCCTCAGCCTCGAGGAAACCCTGCTGGCCTTCGGC
GAGCACTACCGTGCGGTGCGCGACAACCCGGAAGGCGACGACCACGCCAACATCCGCGCCCTGCAACAGACC
GGCCTGGCCGGCGTGCATTTCGAGCGCCAGCCCCTGTCGCGCCGGGGCTGA
Translation:
MTLTDFRARLRSEHHLFTDTLAFIAEHYSYTPSAFDNGSVSNPAGQNEGSCKTLGFAILEGLSLEETLLAFG
EHYRAVRDNPEGDDHANIRALQQTGLAGVHFERQPLSRRG*
AnnotationID:5402GeneID:5397
AnnotatorUID: danlee
Modification Date/Time: 2006-06-01 23:11:20
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|84325737|ref|ZP_00973769.1|  hypothetical protein Paer2_01002883 [Pseudomonas aeruginosa 2192]
 gi|84319801|ref|ZP_00968190.1|  hypothetical protein PaerC_01002464 [Pseudomonas aeruginosa C3719]
Length=112

 Score =  230 bits (586),  Expect = 1e-59
 Identities = 112/112 (100%), Positives = 112/112 (100%), Gaps = 0/112 (0%)

gi|94412862|ref|ZP_01292763.1|  hypothetical protein PaerP_01005340 [Pseudomonas aeruginosa PA7]
Length=112

 Score =  225 bits (574),  Expect = 3e-58
 Identities = 110/112 (98%), Positives = 111/112 (99%), Gaps = 0/112 (0%)

>gb|AAL84249.1|AF458048_2 (AF458048) type III effector HopPmaJ [Pseudomonas syringae pv.
           maculicola]
          Length = 149

 Score =  147 bits (372), Expect = 9e-36
 Identities = 73/109 (66%), Positives = 81/109 (74%)








 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10792




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27941




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5397
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
196425
                           gb|AAO54706.1|
                           (AE016860) type III effector HopPmaJ(Pto) [Pseudomonas syringae pv. tomato str. DC3000]
                           113
                           65.48
                           72.56
                           1
                           365.0
     

     
     
196424
                           gb|AAL84249.1|AF458048_2
                           (AF458048) type III effector HopPmaJ [Pseudomonas syringae pv. maculicola]
                           149
                           50.33
                           55.70
                           37
                           372.0
     

     






      

          
GC ORFID: 48399How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold3_revised_gene5037Glimmer Score: 

          
Start: 3260082Stop: 3260420

          
Length: 339


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold3_revised_gene5037 related to: gi|19071499|gb|AAL84249.1|AF458048_2 (AF458048) type III effector HopPmaJ [Pseudomonas syringae pv. maculicola]Homolog Bit Score 142.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene5037 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCTGACCGACTTCCGCGCGCGTCTGCGCAGCGAACACCACCTGTTCACCGACACCCTGGCGTTCATC 
GCCGAGCACTACAGCTACACGCCGAGCGCCTTCGACAACGGCAGCGTGAGCAACCCGGCCGGGCAGAACGAA 
GGTTCCTGCAAGACCCTGGGCTTCGCCATCCTCGAAGGCCTCAGCCTCGAGGAAACCCTGCTGGCCTTCGGC 
GAGCACTACCGTGCGGTGCGCGACAACCCGGAAGGCGACGACCACGCCAACATCCGCGCCCTGCAACAGACC 
GGCCTGGCCGGCGTGCATTTCGAGCGCCAGCCCCTGTCGCGCCGGGGCTGA