ViewGene

Locus Name:
GeneID:
Location:

GeneID:5395
TrivialName: PA14_32250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32250
PAO1 Ortholog Locus:PA2506
Sequence Length:219
Protein Length:72
Start: 2803064
Stop: 2802846
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05894.1|AE004677_11 (AE004677) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 72/72 (100%), Positives = 72/72 (100%)
Sequence:
ATGAAGATCATCCCGATGCTGCTGGCCGCCCTGCTGGCGACCGGCGCCGCCACTGCCCAGGCCCAGGACGGC
AGCGAACGCTCCTGGCAGTACAACGCCGAATTCCGCGCCGCGCAGAAAGAACTGCGCGAAAAGCGCCTGCAG
AAGCAACAACTGGAAGCGCAAGCGCAGAAGACCGACCGCAGCAAATGCGCCGAGCGCAAGAACGGCAACGGC
TGA
Translation:
MKIIPMLLAALLATGAATAQAQDGSERSWQYNAEFRAAQKELREKRLQKQQLEAQAQKTDRSKCAERKNGNG
*
AnnotationID:5400GeneID:5395
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 16:04:19
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2506
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:10788
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27937
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5395

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7791 PA2506_tr translation of PA2506 72 99.99 99.99 0 359.0
196405 gb|AAG05894.1|AE004677_11 (AE004677) hypothetical protein PA2506 [Pseudomonas aeruginosa PAO1] 72 99.99 99.99 0 359.0
GC ORFID: 48397How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2506Glimmer Score:
Start: 2150860Stop: 2151078
Length: 219
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2506 translation of PA2506Homolog Bit Score 142.0
Other Homologs: t_PA2506 (ORF: GLIMMER)
GC ORF Sequence
ATGAAGATCATCCCGATGCTGCTGGCCGCCCTGCTGGCGACCGGCGCCGCCACTGCCCAGGCCCAGGACGGC
AGCGAACGCTCCTGGCAGTACAACGCCGAATTCCGCGCCGCGCAGAAAGAACTGCGCGAAAAGCGCCTGCAG
AAGCAACAACTGGAAGCGCAAGCGCAGAAGACCGACCGCAGCAAATGCGCCGAGCGCAAGAACGGCAACGGC
TGA